Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_N17
         (898 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   1.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   1.2  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    24   2.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.7  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = +3

Query: 57  NSCEKRFMDPDELYRHLRKE-HLYCHLCDADGKNFYYASHSALAQ--HFRKDHYLCEEGE 227
           N C K F  P  L RH R       + C+   K+F    + ++ +  H ++  Y C+  E
Sbjct: 95  NICGKTFAVPARLTRHYRTHTGEKPYQCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCE 154

Query: 228 CAGQHLAAVFR 260
            A +H   + R
Sbjct: 155 RAFEHSGKLHR 165



 Score = 22.6 bits (46), Expect = 5.0
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
 Frame = +3

Query: 63  CEKRFMDPDELYRHLR-KEHLYCHLCDADGKNFYYASHSA--LAQHFRKDHYLCE 218
           CE+ F    +L+RH+R       H C    K F  +      +  H  +  Y+C+
Sbjct: 153 CERAFEHSGKLHRHMRIHTGERPHKCTVCSKTFIQSGQLVIHMRTHTGEKPYVCK 207


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 328 DKPEHSNCSSISHRTLSPLREHP 396
           D+  HS+   I H+ L+P++  P
Sbjct: 238 DENRHSSTLDIDHKMLTPIKSEP 260


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 66  EKRFMDPDELYRHLRKEHLYCHLCDADGKNFYYASH 173
           EK F  P+   R  R  HL  H+    G+  Y+ SH
Sbjct: 7   EKPFECPECHKRFTRDHHLKTHMRLHTGEKPYHCSH 42



 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = +3

Query: 63  CEKRFMDPDELYRHLR---KEHLY-CHLCDA 143
           C+++F+    L RHLR    E  Y C LC A
Sbjct: 43  CDRQFVQVANLRRHLRVHTGERPYACELCAA 73


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -2

Query: 249  QLNVVRHTRPLHISSDPCGNVEQVRSVKHNR 157
            +L + RH     +    CGN  Q+    HN+
Sbjct: 1450 ELQLSRHATSHELKGLLCGNTYQLYLTSHNK 1480


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -2

Query: 249  QLNVVRHTRPLHISSDPCGNVEQVRSVKHNR 157
            +L + RH     +    CGN  Q+    HN+
Sbjct: 1446 ELQLSRHATSHELKGLLCGNTYQLYLTSHNK 1476


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 167 FTLRTCSTFPQGSLLM*RGRVCRTTFS 247
           FT R CS FP  +L       C+ TFS
Sbjct: 92  FTTRDCSLFPGNAL------SCKETFS 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,072
Number of Sequences: 438
Number of extensions: 4521
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)