Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_N12
         (918 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.7  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              23   3.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -1

Query: 726 GGGVXPPXXXAPPPPPXXGG 667
           G    PP    PPPPP   G
Sbjct: 333 GDSDTPPKPAPPPPPPSSSG 352



 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = -2

Query: 728 GGGGXXPPXXXPPPPPXXGG 669
           G     P    PPPPP   G
Sbjct: 333 GDSDTPPKPAPPPPPPSSSG 352


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 37  IHCAWRGFFITDKLVDILCLSVIKCQ 114
           +HC  R  F++D+++      V  CQ
Sbjct: 20  VHCGTRPSFVSDEMIATAASVVNACQ 45


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 694 PPPPPXXGG 668
           PPPPP  GG
Sbjct: 376 PPPPPIRGG 384



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 693 PPPPPXXGG 667
           PPPPP  GG
Sbjct: 376 PPPPPIRGG 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,434
Number of Sequences: 438
Number of extensions: 6893
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)