Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_N06
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    28   1.6  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    28   1.6  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    28   2.1  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.7  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   6.3  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   6.3  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    26   8.3  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    26   8.3  

>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 282 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNN 398
           F+ W+    P+ S  +L ++G PP + LS  L   ++ N
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKN 298


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 4/130 (3%)
 Frame = +3

Query: 306 NPTKSTAVLFKRGRPPNTTLS----IPLPTRRVNNPAPAVRPITMYDQPIPWAPKVKYLG 473
           +P KS+  + ++    ++ LS     P   R  + PAP  RP++    P+          
Sbjct: 267 SPMKSSRDISRKPSMASSVLSPSDYFPQHRRFQSAPAPIPRPVSTLI-PLTQVRTTASNV 325

Query: 474 VTLDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPGHDLCKCS 653
           +    + T RP       +    L + +  + RR     +  +        P H++ +  
Sbjct: 326 IKPRPQTTERPSTAQSFRKGGGFLKKTFKKLLRRGSSKRKPSLQPTPPVSYPAHNVPQKG 385

Query: 654 VRSRGPHTLK 683
           VR   PHTLK
Sbjct: 386 VRPASPHTLK 395


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 84  ITSQPESRKAPPSPRLLFSLYINDIPRSPETHLALFA 194
           I +QP+  K  PSP   F L+   + RS ET+L  +A
Sbjct: 47  IDTQPKEEKPEPSPSSPFGLFAYVVKRS-ETYLIQYA 82


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 451 PRRSNI*ASPSTVG*HSAPTSRRYAIVPPSS*DVSTR 561
           P  SN  +  ST   H  P+S+R +++PP++ ++ +R
Sbjct: 314 PSGSNQASLRSTSTIHYTPSSKRISVIPPNTSNIGSR 350


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 512 DVGAECHPTVEGDA*IFDLRGPRYGLVVHRDWANG 408
           DV A C  +++     +DLR PR+ +    DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
 Frame = +3

Query: 159 PRSPETHLALFADDTAIYYSCRKKALLHRRL---QTAATTMGQWFRKWRIDINPTKSTAV 329
           P++ +   +LF+D++ +  S    +L          ++  +   F++ +       ST +
Sbjct: 326 PQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGL 385

Query: 330 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRP 419
           L K+ RP       PLP    + P+  VRP
Sbjct: 386 LSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 564 ICRRSKMSLRNKVTLYKTCIRPGHDLC 644
           +C+R    L N++     C  P H LC
Sbjct: 195 VCQRGHSPLSNRIVFCDGCNSPYHQLC 221


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +3

Query: 330 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMYDQPIP---WAPKVKYLGVTLDSRMTF 500
           L ++ RP   +L+       V+  AP++R     ++  P   W PK K  G     R   
Sbjct: 408 LLEKLRPEMISLNADF-IGNVDRAAPSLRKAEAEEEKPPEEKWVPKAKARGKNSALRRYL 466

Query: 501 RPHIKTVRDR 530
           R H + V D+
Sbjct: 467 RKHARNVVDQ 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,572,642
Number of Sequences: 5004
Number of extensions: 78414
Number of successful extensions: 221
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)