Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_M24
(891 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 259 4e-70
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 252 7e-68
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 46 5e-06
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 1.2
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 29 1.2
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 3.6
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 26 8.3
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom... 26 8.3
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 259 bits (634), Expect = 4e-70
Identities = 130/211 (61%), Positives = 154/211 (72%)
Frame = +2
Query: 95 VLALNEEDVTKMLAATTHLGAENVNFQXETYVYKRRADGTHVINLRRTWEKLVLAARAVV 274
VL ++D+ +LAA +H+G++N+ + E YV+KRR+DG H+INL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 275 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 454
IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV D
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129
Query: 455 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 634
P D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVLRLR
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLR 189
Query: 635 GCASP*PALGCCG*FGSSYRDPEXSETDDXQ 727
G S A YRDPE E ++ Q
Sbjct: 190 GNISRTTAWEVMPDL-YFYRDPEEIEREEEQ 219
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 252 bits (616), Expect = 7e-68
Identities = 123/213 (57%), Positives = 154/213 (72%)
Frame = +2
Query: 83 GGLDVLALNEEDVTKMLAATTHLGAENVNFQXETYVYKRRADGTHVINLRRTWEKLVLAA 262
G ++L +ED+ ++LAA H+G++N+ + + YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 263 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 442
R + IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+
Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124
Query: 443 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREV 622
+V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREV
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREV 184
Query: 623 LRLRGCASP*PALGCCG*FGSSYRDPEXSETDD 721
LR+RG S YRDPE E ++
Sbjct: 185 LRVRGTLSRSAPWDVMPDL-YFYRDPEEVEREE 216
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 46.4 bits (105), Expect = 5e-06
Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 27/190 (14%)
Frame = +2
Query: 128 MLAATTHLGAENV--NFQXETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVF 301
+L++ HLG N + ++Y +R +G H+I+L +T L A V +I +
Sbjct: 53 LLSSGAHLGHSTSIWNPYTQPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGII 111
Query: 302 VISSRPFGQR-AVLKFAAHTGATPIAGRFTPGAFTN--QIQA------------------ 418
+ GQ+ +V+ A I R+ PG TN ++Q
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQT 171
Query: 419 ----AFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHS 586
++ P L+++L+P ++ EA ++P I + +TD+ R V IP N S
Sbjct: 172 DKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRC 231
Query: 587 IGLMWWLLAR 616
L+ LL+R
Sbjct: 232 TDLIAGLLSR 241
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +2
Query: 218 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 394
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.7 bits (61), Expect = 1.2
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = +2
Query: 353 HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIAL 517
+ A P G T+ I A F+ +P + ++ D + T A + + L
Sbjct: 29 YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87
Query: 518 CNTDSPLRFVDIAIPCNTKSSHSI 589
C+ +S RF D+A+ NTK +H I
Sbjct: 88 CDRNSK-RFADLAVAANTKFTHFI 110
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 3.6
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -3
Query: 481 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DD 302
S GL L R + E F + +S + W T + + G+RG ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 301 EHISGVLDG 275
H SGV G
Sbjct: 226 LH-SGVFGG 233
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 678 NQPQH-PSAGHGEAHPRSLNTSRANNHHIK 592
++PQ P+ GH E P + +SRA H+K
Sbjct: 5 HRPQFDPARGHSEMAPTRITSSRALPAHLK 34
>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 470
Score = 25.8 bits (54), Expect = 8.3
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Frame = +3
Query: 156 QKMLTSRXRPMSTNDVLMVPM*STCVVPGKNLFWL----LVLS*PSRTPLMCSSSHHGPS 323
+K++ S + VL V S +VPG L W+ L + +R +C+ S G S
Sbjct: 270 KKLIPSLLHLDTDGRVLRVDSFSKLIVPGLRLGWITGNSLFIDRITRYAEVCTESPSGVS 329
Query: 324 VSVLY*SLPR 353
VLY L R
Sbjct: 330 QVVLYAILNR 339
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,666,757
Number of Sequences: 5004
Number of extensions: 79764
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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