Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_M24
(891 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 254 7e-68
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 250 1e-66
12_01_0794 + 7285100-7285369,7285931-7286338 30 2.8
01_05_0535 - 23001864-23005052 29 3.8
06_03_0979 + 26502221-26502493 29 5.0
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 29 5.0
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 6.6
09_06_0103 + 20873310-20873382,20873530-20873735 29 6.6
02_05_0924 - 32749682-32750200,32750756-32750959,32751062-327511... 29 6.6
02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196... 29 6.6
02_04_0452 + 23044190-23045227 29 6.6
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 8.7
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 254 bits (622), Expect = 7e-68
Identities = 124/222 (55%), Positives = 156/222 (70%)
Frame = +2
Query: 65 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQXETYVYKRRADGTHVINLRRTWE 244
++A G L+ E+DV MLAA HLG +N +FQ E YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 245 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 424
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 425 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 604
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180
Query: 605 LLAREVLRLRGCASP*PALGCCG*FGSSYRDPEXSETDDXQA 730
LLAR VL++RG P YRDPE ++ + +A
Sbjct: 181 LLARMVLQMRGTILPGHKWDVMVDL-FFYRDPEEAKEQEEEA 221
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 250 bits (612), Expect = 1e-66
Identities = 124/217 (57%), Positives = 152/217 (70%)
Frame = +2
Query: 98 LALNEEDVTKMLAATTHLGAENVNFQXETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 277
L+ E+D+ MLAA HLG +N +FQ E YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 278 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 457
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 458 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 637
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
Query: 638 CASP*PALGCCG*FGSSYRDPEXSETDDXQAXEXAVV 748
P YRDPE E + + E A+V
Sbjct: 192 TILPGHKWDVMVDL-FFYRDPE--EAKEQEEEEAALV 225
>12_01_0794 + 7285100-7285369,7285931-7286338
Length = 225
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 682 TKSTTTSQRWSRGSTPTKPQHFTCQQPPHQTN 587
TKST +S S GS+ K +HFT ++P N
Sbjct: 39 TKSTKSSSSESDGSSRKKRKHFTWEEPVSHAN 70
>01_05_0535 - 23001864-23005052
Length = 1062
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +3
Query: 636 GVLPRDQRWDVVVDLVLPTGTLXKV----KXMTXRPXNXLW 746
G+LPR + + V+DL+ G L K+ K M +P +W
Sbjct: 819 GILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIW 859
>06_03_0979 + 26502221-26502493
Length = 90
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 646 GSTPTKPQHFTCQQPPHQTNRVGRLGV 566
G TP +P QQPPH T G LG+
Sbjct: 7 GGTPVEPCGRLSQQPPHHTAYPGDLGL 33
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 29.1 bits (62), Expect = 5.0
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +1
Query: 118 CHQNACCNHPSWGRKC*LPXGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 297
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 298 VRHLITALRSACCTEVCR 351
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 165 TFSAPRWVVAASILVTSSSLRASTSNP 85
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +1
Query: 343 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 450
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>02_05_0924 -
32749682-32750200,32750756-32750959,32751062-32751109,
32751769-32751819,32751907-32752032,32752117-32752257,
32752750-32752971,32753160-32753312,32753536-32753718,
32753964-32754110,32754212-32754319,32754426-32754530,
32754824-32754928,32755243-32755310,32755498-32755576,
32755876-32755935,32756023-32756076,32756168-32756233,
32756701-32756753,32757042-32757096,32757645-32757787,
32758236-32758333,32758436-32758716
Length = 1022
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/59 (35%), Positives = 28/59 (47%)
Frame = -1
Query: 660 SAGHGEAHPRSLNTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLHKAITGMLTYEA 484
S GHGE SL+ K I+ DL+ + + LSGE LH ++ LT EA
Sbjct: 642 SIGHGEFATDSLHGEETPLASRKTIDHVDLLREQLKI---LSGEVALHTSVLKRLTEEA 697
>02_05_0888 - 32517876-32518087,32518320-32518694,32519551-32519638,
32520145-32520384,32521033-32521149,32521213-32521606,
32521752-32521998,32522086-32522315,32522768-32522823,
32522903-32523094,32523274-32523376,32523478-32523544,
32524312-32525154,32525547-32525670,32525965-32526213,
32526354-32526443,32526530-32526649,32526664-32526738,
32527001-32527147,32527255-32527365,32527446-32527667,
32527777-32527896,32527971-32528270,32528355-32528480,
32529246-32529360,32529556-32530019,32530119-32530253,
32530684-32530788,32530876-32531053,32531143-32531864
Length = 2188
Score = 28.7 bits (61), Expect = 6.6
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Frame = -1
Query: 645 EAHPRSLNTSRANNHHIKPIEWEDLVLH---GIAMSTNLSGESVLH-KA------ITGML 496
EAH ++ S H+K E LH G++ S NLS ++++ KA + +
Sbjct: 1311 EAHVKTRTRSSKRTAHMKG-EKASTELHCKNGLSCSDNLSTDTLVRGKANCILDGVDQSI 1369
Query: 495 TYEASVMG*WSCAGSNTIKRRGSRN 421
Y S+ G W+C NT+ +N
Sbjct: 1370 DYTCSIFGCWNCLFVNTLNSGSIQN 1394
>02_04_0452 + 23044190-23045227
Length = 345
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 666 HPSAGHGEAHPRSLNTSRANNHHIKP 589
H GHG AH S + SRA+N +P
Sbjct: 173 HAGHGHGHAHSHSHSHSRAHNPSTRP 198
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 347 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 192
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,003,825
Number of Sequences: 37544
Number of extensions: 609772
Number of successful extensions: 1518
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1518
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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