Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_M24
         (891 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.9  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   8.6  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   8.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 682 TKSTTTSQRWSRGSTPTKPQHFTCQQPPHQTNRV 581
           T +TTT+   +  +TP   Q+ +   PP Q + V
Sbjct: 663 TTTTTTTTTTTTTTTPNTTQNASATTPPPQVDEV 696


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
 Frame = -1

Query: 672 PQHPSAGHGEAH----PRSLNTSRANNHH 598
           P H + GHG +H    P   ++  A  HH
Sbjct: 414 PHHHTMGHGHSHIHATPHHHHSHAATPHH 442


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +2

Query: 23  FASQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNF-QXETYVYKR 199
           FAS   YT   +   S T+  G+  +AL+   +T+ L  +  L + N+N+   E +V  +
Sbjct: 229 FASDPRYTTFTINGESFTLQSGIFGMALS--PLTQNLYYSA-LSSHNLNYVNTEQFVKSQ 285

Query: 200 -RADGTH 217
            +A+  H
Sbjct: 286 YQANNVH 292


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 641 HTHEASTLHVPTTTTS 594
           H H A   H+P T TS
Sbjct: 105 HPHTAMVTHLPQTLTS 120


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +2

Query: 446 VLDPAQDHQPITEASYVNIPVIALCNTDSP 535
           ++DP ++++   E   + IP++   +   P
Sbjct: 167 IVDPVEENETYDEFDTIRIPIVRSLSKSPP 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,906
Number of Sequences: 438
Number of extensions: 5979
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)