Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_M11
(890 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 58 2e-09
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 38 0.001
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 32 0.13
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 28 1.6
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch... 28 2.1
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 28 2.1
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 27 4.7
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 4.7
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 26 8.3
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 26 8.3
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 8.3
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 26 8.3
>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1163
Score = 57.6 bits (133), Expect = 2e-09
Identities = 33/115 (28%), Positives = 57/115 (49%)
Frame = +3
Query: 417 STNREIVAAALSFLKVYTKVIPVDVLAGSLPLIFKTLSNMPDDCKRHSRLEIGYFLSKML 596
S+ REI AA+ F+K+ PV+ + LP + L + K + R+++ + KM
Sbjct: 877 SSKREIAKAAIDFIKISVSSFPVECIKPLLPELIPNLLAWSHEGKANLRVKVRHLFEKMG 936
Query: 597 RKYGADTVEKLIPKTDGVMLRGFRNIRKMDNRKKRLKERNADXDPNLKQRRRSRA 761
RKYG +E P D ++ R ++ + RK+ +K A P+ Q R++ A
Sbjct: 937 RKYGIAEIEPFFPAEDKKLITNIRKTQERNIRKRAMKRDPA--KPSSAQPRKTFA 989
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 38.3 bits (85), Expect = 0.001
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Frame = +2
Query: 23 LMTSLNKVADSSKAA-------RLRCLECLINTTPTLNAESKLLRSAIAESVVCTRDINS 181
L S+N V D S+A RL+ + L P N E LL SAIAE V+ ++ +
Sbjct: 691 LYDSMNSVGDGSQALPKYVALERLKTWKLLFKLLP--NDEFHLLPSAIAEVVLFSKHHDD 748
Query: 182 KCRQCAFNLITCVGNVLKKQDGGMQGFLSMVLVGMSAQPPRVVSATLRALASVL 343
R AF L+ VGN +K +GG ++M L+ VV A + S++
Sbjct: 749 DLRAMAFELLVEVGNRMK--NGGK---INMSLIDGEEPNKTVVEANINEYISMI 797
Score = 36.7 bits (81), Expect = 0.004
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Frame = +3
Query: 387 LLEKVAEQMLSTNREIVAAALSFLKVYTKVIPVDVLAGSLPLIFKTLSNMPDDCKRHSRL 566
+LE+V + S N+EI AA+ F+K+Y + L + + + + +L
Sbjct: 835 VLEEVQSSLQSNNQEIARAAVGFIKMYITSFTKSKVLFHLDTLLPLILRWIKEHNAYVKL 894
Query: 567 EIGYFLSKMLRKYGADTVEKLIP-KTDGVMLRGFRNIRKMDNRKKRL-KERNADXDPNL 737
+ L +MLR + +E +TD L+ +R+ KK + +R+A +L
Sbjct: 895 KAKQLLDRMLRVFSLKELEAFAENETDKEWLQRIWRVRRSRGDKKVVDNKRDASDSEDL 953
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 31.9 bits (69), Expect = 0.13
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 393 EKVAEQMLSTNREI-VAAALSFLKVYTKVIPVDVLAGSLPLIFKTLSNMPDD 545
E V +LS++ E V LK+Y + +P ++L S+ +F+ L N+P+D
Sbjct: 1123 EGVDYDLLSSDEEFDVHVIAGLLKLYLRNLPTNLLDTSMHKLFELLPNVPND 1174
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -2
Query: 451 LSAAATISLLVLSICSATFSSRXLDRLQAHILG 353
L A ++ ++++ +CS++FS + R QA +LG
Sbjct: 750 LCAFQSLKIILIRLCSSSFSIQDAGRRQAELLG 782
>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 388
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 729 PNLKQRRRSRARRTPWKNSEGSGLRH 806
P K RR RAR+ W+ G G H
Sbjct: 292 PKRKNRRGQRARQAIWEKKYGKGANH 317
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +2
Query: 311 SATLRALASVLFNFSEDMGLETVQGSAG---EGRRTDAEHQQRNSGGRA 448
+ATLR LA L +E+M +V G G +GR D + Q + RA
Sbjct: 118 TATLRRLAERLSTVAEEMASSSVPGLKGLKKKGRDADTKSQNDLTASRA 166
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 784 EFFQGVRRALDRRLCFRF 731
+FFQ V++ +D LCFRF
Sbjct: 296 QFFQHVKKFVDPLLCFRF 313
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +3
Query: 648 VMLRGFRNIRK-----MDNRKKRLKERNADXDPNLKQRRRSRARRTPWKNS 785
++ GF N R+ ++NR + R+ D DP + + S RR W+ S
Sbjct: 295 ILREGFDNYRRYRQDRVENRIQTQVLRHVDVDPPIVEEHSSFFRRRRWRRS 345
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 770 CSTCP*SASLFQIRIXVRVPL 708
CSTC SA+LF I + V +P+
Sbjct: 240 CSTCSISAALFFILLLVCIPI 260
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 770 CSTCP*SASLFQIRIXVRVPL 708
CSTC SA+LF I + V +P+
Sbjct: 230 CSTCSISAALFFILLLVCIPI 250
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 467 VNLEKAERGRHYFSVGAQHLFGDLLQ 390
V L++ R RHY G+ LFG+ L+
Sbjct: 126 VYLDQVHRPRHYRGSGSAPLFGNFLE 151
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 678 KMDNRKKRLKERNADXDPNLKQRRRSR 758
+ DN KK + R + NLK+RR S+
Sbjct: 190 RKDNEKKAMLMRQQRREENLKKRRESK 216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,188,360
Number of Sequences: 5004
Number of extensions: 58174
Number of successful extensions: 221
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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