Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_M08
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    27   2.5  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    27   2.5  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   4.4  
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...    26   7.8  

>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 664 MVYSQKSSIAFQDSSLPSIVATTVGSDKSGPICETRTRRC 545
           +V  Q  ++A+ +    S+VA    + K GP+ E   R C
Sbjct: 645 VVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSC 684


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 664 MVYSQKSSIAFQDSSLPSIVATTVGSDKSGPICETRTRRC 545
           +V  Q  ++A+ +    S+VA    + K GP+ E   R C
Sbjct: 645 VVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSC 684


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 234 GEGAIRARRLQSRRSVLEAWSRRLANPSAGLRT 332
           G   IRAR+    RS    WS R+  P+ G  T
Sbjct: 239 GSNTIRARQTTRTRSNTLPWSPRVFGPTLGYNT 271


>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 432 GRYLHRIARREPTMECHHCDCDEDTVEHTLAYCP 533
           G  L  + + E   E   CD DED ++ +  Y P
Sbjct: 100 GGVLREVVKHECVEEAILCDIDEDVIKVSKQYLP 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,367,199
Number of Sequences: 5004
Number of extensions: 66363
Number of successful extensions: 202
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)