Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_M08
         (850 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ...    29   3.2  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical pr...    29   5.5  
AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical...    29   5.5  
Z70750-14|CAC42268.1|  450|Caenorhabditis elegans Hypothetical p...    28   7.3  
Z83120-6|CAB76722.1|  809|Caenorhabditis elegans Hypothetical pr...    28   9.6  
U23514-8|AAC46540.2|  467|Caenorhabditis elegans Hypothetical pr...    28   9.6  
AC084153-16|AAK84590.1|  233|Caenorhabditis elegans Hypothetical...    28   9.6  

>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
            isoform b protein.
          Length = 2692

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +2

Query: 707  PLRTYPSPPSRGSEKGLXPTPA 772
            PL  YP PP  GS  GL P PA
Sbjct: 1991 PLSDYPVPPPLGSLVGLPPMPA 2012


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 94  KSVDTAPSPSRRRAFSPGRLPGTWRRRRSP 183
           +S   + SP+ RR  SP + P   RRRRSP
Sbjct: 441 RSPSQSKSPAPRRRRSPSKSPQAPRRRRSP 470


>Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical
           protein R10E8.3 protein.
          Length = 522

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 441 LHRIARREPTMECHHCDCDEDTVE 512
           LH  + R+P+ E  HCD +  T+E
Sbjct: 313 LHNFSNRKPSFETFHCDFERYTLE 336


>Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical
           protein C27B7.7 protein.
          Length = 1471

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 216 RGEPRPGEGAIRARRLQSRRSVLEAWSRRLANPSAGL 326
           RG+PRP      + R  + +  ++ WSR  A  SAG+
Sbjct: 470 RGKPRPSISVAISDRKNASQVEVDVWSRLQATSSAGI 506


>AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical
           protein Y37E3.13 protein.
          Length = 472

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 438 YLHRIARREPTMECHHCDCDEDTVEHTLAYCPAWLEQRRVLVSQ 569
           YLH      P   C +C+ D+D V+ T   C  W +     V Q
Sbjct: 369 YLHTKVLEIPHDSCEYCEVDDDDVDDT---CEDWGDAETAAVRQ 409


>Z70750-14|CAC42268.1|  450|Caenorhabditis elegans Hypothetical
           protein C50F4.16 protein.
          Length = 450

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 665 LAEGGGGTREGELIPLRTYPSPPSRGSEKGLXPTPAPVNG 784
           ++EGGG   EGE+I    YP   +R   +    T A V G
Sbjct: 164 ISEGGGNVHEGEVITKVYYPVNVAREIARPAIGTHAEVKG 203


>Z83120-6|CAB76722.1|  809|Caenorhabditis elegans Hypothetical
           protein R06A4.9 protein.
          Length = 809

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 561 QGHGVAPAMRGNMRAYARPCPRRSHSGDTP 472
           QG+G    M GN   + RP P+ S+ G  P
Sbjct: 616 QGYGPPGRMGGNQGGWQRPPPQGSYGGQGP 645


>U23514-8|AAC46540.2|  467|Caenorhabditis elegans Hypothetical
           protein F48E8.2 protein.
          Length = 467

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = -3

Query: 188 IGGERLRLQVPG---RRPGENARRLE--GDGAVSTDLCMTQVVTASIQSIIAKIDVSKFY 24
           + GE++ ++  G   RR  + A++     DG V  D   TQV  +S  +I+A +D  + Y
Sbjct: 398 LDGEKMAIEKTGKDRRRDRQKAKKSGKMADGPVLPDEMYTQVKCSSCGTIVAMMDSDEIY 457

Query: 23  IVF 15
             F
Sbjct: 458 HFF 460


>AC084153-16|AAK84590.1|  233|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.16 protein.
          Length = 233

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 444 HRIARREPTMECHHCDCDEDTVEHTLAY 527
           H I   E    C+HCD   +++E   A+
Sbjct: 73  HEIKNHEDQFNCYHCDKKSESIERLAAH 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,941,283
Number of Sequences: 27780
Number of extensions: 450748
Number of successful extensions: 1627
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1626
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)