Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_M06
         (815 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   159   2e-39
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   157   7e-39
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    30   2.5  
01_06_1521 + 37956131-37957204,37958560-37958962,37959370-379594...    29   4.4  
05_04_0394 - 20906923-20907146,20907251-20907340,20908380-209087...    28   7.7  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  159 bits (386), Expect = 2e-39
 Identities = 75/128 (58%), Positives = 92/128 (71%), Gaps = 1/128 (0%)
 Frame = +2

Query: 35  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 214
           MSHRKF  PRHGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE 
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREV 60

Query: 215 DRPGFKNQQEEIVEAVTIIXTPPMVWSVLLGYIENPHGLXXLXTVWA-XLFXKXAXSF*K 391
           ++PG K  ++E  EAVTII TPP+V   L+ Y++ P GL  L +VWA  L  +    F K
Sbjct: 61  EKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120

Query: 392 TGXNGKKR 415
                KK+
Sbjct: 121 NWCKSKKK 128


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  157 bits (382), Expect = 7e-39
 Identities = 74/128 (57%), Positives = 92/128 (71%), Gaps = 1/128 (0%)
 Frame = +2

Query: 35  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 214
           MSHRKF  PRHGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE 
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREV 60

Query: 215 DRPGFKNQQEEIVEAVTIIXTPPMVWSVLLGYIENPHGLXXLXTVWA-XLFXKXAXSF*K 391
           ++PG K  ++E  EAVTII TPP+V   L+ Y++ P GL  L +VWA  L  +    F K
Sbjct: 61  EKPGSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120

Query: 392 TGXNGKKR 415
                KK+
Sbjct: 121 NWCKSKKK 128


>07_03_0481 -
           18572206-18574314,18574591-18575185,18575304-18575371,
           18577344-18577458,18578179-18578333,18578673-18580621,
           18580691-18581372,18581550-18581621,18582558-18583199,
           18583301-18583402,18585011-18585100
          Length = 2192

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 26  SSSMSHRKFSAPRHGSM-GFYPKKRSRRHRGKVKAFPKDDPSKPVHLT 166
           S+S+ H +   P+  S+ G  P   +++ + KVK   K  P   VH+T
Sbjct: 237 STSLEHSESPPPKRKSLDGRTPASSTKKGKKKVKFVDKKHPENAVHIT 284


>01_06_1521 +
           37956131-37957204,37958560-37958962,37959370-37959471,
           37959569-37959792
          Length = 600

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 8   FLVCDLSSSMSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDD 142
           F  CD+ +S +H+    PR G + F   K  RR  G      ++D
Sbjct: 364 FDYCDVVTSTTHKNLRGPRGGIIFFRRGKNLRRRTGSFSQADEND 408


>05_04_0394 -
           20906923-20907146,20907251-20907340,20908380-20908785,
           20909264-20910247
          Length = 567

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 8   FLVCDLSSSMSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDD 142
           F  CD+ +S +H+    PR G + F   K  R+  G +    ++D
Sbjct: 334 FDYCDIVTSTTHKSLRGPRGGIIFFRKGKNLRKRVGSLTQVVEND 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,565,820
Number of Sequences: 37544
Number of extensions: 278143
Number of successful extensions: 430
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)