Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_M06
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal prote...   169   2e-42
Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal prote...   169   2e-42
Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical p...   169   2e-42
Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical p...   169   2e-42
Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical pr...   169   2e-42
Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical pr...   169   2e-42
Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical p...    64   2e-10
Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical pr...    64   2e-10
Z66495-13|CAA91278.1|  722|Caenorhabditis elegans Hypothetical p...    28   9.2  
Z35602-3|CAA84672.1|  722|Caenorhabditis elegans Hypothetical pr...    28   9.2  

>Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score =  169 bits (411), Expect = 2e-42
 Identities = 80/152 (52%), Positives = 102/152 (67%), Gaps = 1/152 (0%)
 Frame = +2

Query: 35  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 214
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 215 DRPGFKNQQEEIVEAVTIIXTPPMVWSVLLGYIENPHGLXXLXTVWA-XLFXKXAXSF*K 391
           D+PG K  ++E+VEAVTI+ TPPMV + + GY++ P G   L T+WA  L  +    F  
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120

Query: 392 TGXNGKKRXSLNPLKNXXXXXGXQXXKKNFXK 487
                KK+      K      G +  + +F K
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAK 152


>Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score =  169 bits (411), Expect = 2e-42
 Identities = 80/152 (52%), Positives = 102/152 (67%), Gaps = 1/152 (0%)
 Frame = +2

Query: 35  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 214
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 215 DRPGFKNQQEEIVEAVTIIXTPPMVWSVLLGYIENPHGLXXLXTVWA-XLFXKXAXSF*K 391
           D+PG K  ++E+VEAVTI+ TPPMV + + GY++ P G   L T+WA  L  +    F  
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120

Query: 392 TGXNGKKRXSLNPLKNXXXXXGXQXXKKNFXK 487
                KK+      K      G +  + +F K
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAK 152


>Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score =  169 bits (411), Expect = 2e-42
 Identities = 80/152 (52%), Positives = 102/152 (67%), Gaps = 1/152 (0%)
 Frame = +2

Query: 35  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 214
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 215 DRPGFKNQQEEIVEAVTIIXTPPMVWSVLLGYIENPHGLXXLXTVWA-XLFXKXAXSF*K 391
           D+PG K  ++E+VEAVTI+ TPPMV + + GY++ P G   L T+WA  L  +    F  
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120

Query: 392 TGXNGKKRXSLNPLKNXXXXXGXQXXKKNFXK 487
                KK+      K      G +  + +F K
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAK 152


>Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score =  169 bits (411), Expect = 2e-42
 Identities = 80/152 (52%), Positives = 102/152 (67%), Gaps = 1/152 (0%)
 Frame = +2

Query: 35  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 214
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 215 DRPGFKNQQEEIVEAVTIIXTPPMVWSVLLGYIENPHGLXXLXTVWA-XLFXKXAXSF*K 391
           D+PG K  ++E+VEAVTI+ TPPMV + + GY++ P G   L T+WA  L  +    F  
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120

Query: 392 TGXNGKKRXSLNPLKNXXXXXGXQXXKKNFXK 487
                KK+      K      G +  + +F K
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAK 152


>Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score =  169 bits (411), Expect = 2e-42
 Identities = 80/152 (52%), Positives = 102/152 (67%), Gaps = 1/152 (0%)
 Frame = +2

Query: 35  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 214
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 215 DRPGFKNQQEEIVEAVTIIXTPPMVWSVLLGYIENPHGLXXLXTVWA-XLFXKXAXSF*K 391
           D+PG K  ++E+VEAVTI+ TPPMV + + GY++ P G   L T+WA  L  +    F  
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120

Query: 392 TGXNGKKRXSLNPLKNXXXXXGXQXXKKNFXK 487
                KK+      K      G +  + +F K
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAK 152


>Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score =  169 bits (411), Expect = 2e-42
 Identities = 80/152 (52%), Positives = 102/152 (67%), Gaps = 1/152 (0%)
 Frame = +2

Query: 35  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 214
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 215 DRPGFKNQQEEIVEAVTIIXTPPMVWSVLLGYIENPHGLXXLXTVWA-XLFXKXAXSF*K 391
           D+PG K  ++E+VEAVTI+ TPPMV + + GY++ P G   L T+WA  L  +    F  
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120

Query: 392 TGXNGKKRXSLNPLKNXXXXXGXQXXKKNFXK 487
                KK+      K      G +  + +F K
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAK 152


>Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 27/34 (79%), Positives = 30/34 (88%)
 Frame = +2

Query: 35  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 136
           MSHRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34


>Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 27/34 (79%), Positives = 30/34 (88%)
 Frame = +2

Query: 35  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 136
           MSHRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34


>Z66495-13|CAA91278.1|  722|Caenorhabditis elegans Hypothetical
           protein R13G10.4 protein.
          Length = 722

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -2

Query: 271 DDGDSLHDLFLLIFEPGTVRFSNHVGHTGLITDKSSQ 161
           +D   LHDL L+IFE GTV  +N V     + D  SQ
Sbjct: 550 NDKLELHDLLLVIFE-GTVLVTNEVETFERVIDVPSQ 585


>Z35602-3|CAA84672.1|  722|Caenorhabditis elegans Hypothetical
           protein R13G10.4 protein.
          Length = 722

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -2

Query: 271 DDGDSLHDLFLLIFEPGTVRFSNHVGHTGLITDKSSQ 161
           +D   LHDL L+IFE GTV  +N V     + D  SQ
Sbjct: 550 NDKLELHDLLLVIFE-GTVLVTNEVETFERVIDVPSQ 585


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,217,425
Number of Sequences: 27780
Number of extensions: 227096
Number of successful extensions: 351
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)