Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_L22
         (852 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.51 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.88 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   2.0  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 580 EVIPDTDKMVCGMKGV 627
           +VIP T + VCG+KG+
Sbjct: 532 DVIPGTQEHVCGVKGI 547



 Score = 24.2 bits (50), Expect = 1.5
 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
 Frame = -2

Query: 500  PTGKKALTLMSATYLEVGPAVQRTLSIIPDAVLLITAPM----ISSPVFTLSKKCLNLAV 333
            PTG+  L  ++ T L   P +    +I PD+  L+T       ++  V  +S   L  A 
Sbjct: 722  PTGQLLLDYLTDTVLAYKPKILGKPTISPDSRHLVTLDKQETGVTLVVQEISSDGLKFAF 781

Query: 332  -LSTFKNVSNGGINAYKLSSGTRVSVPLVDDEGV 234
             + T  N+S+  +   + + G  +    +D E +
Sbjct: 782  DVKTTLNISDIALYPSQTTHGYDIYASSIDKENI 815


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +1

Query: 223  LLEDTPSSSTNGTETLVPEDNLYALMPPFE-TF-LNVDKTARLRHFFDNVKTGEL 381
            +L   P S   GT  ++P+DN    +P  E  F LNV+        ++ + T +L
Sbjct: 1047 ILNLRPLSMEKGTRPMIPDDNTSLALPKNEGPFRLNVETAKTNEEMWELIDTEKL 1101


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 247 STNGTETLVPEDNLYALMPPFETFLNVDKTARLRH 351
           S    ET++  ++ Y L PP E   +  +T R R+
Sbjct: 109 SRQDIETIIRRNSRYPLRPPQEVISHYRRTRRDRY 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,237
Number of Sequences: 438
Number of extensions: 4079
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)