Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_L18
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    30   0.52 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   0.92 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   3.7  
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac...    26   8.5  

>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -1

Query: 358 PEAGSPPRPAPGLCSRPPLCLLHPQGVPRRSLP-CFLQRPPTP 233
           P  G P  P+  +  RPP  +       RR  P  F+ RPP P
Sbjct: 399 PTQGQPESPSKSILLRPPPSIASSPESKRRKCPKKFVARPPVP 441


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +3

Query: 228 RTGVGGRCRKQGRERRGTPCGCRRQSGGRLQSPGAGRGGEPASGNLFP 371
           RTG G R  + G   RG   G     GGR +  G  R G P  G++ P
Sbjct: 444 RTGGGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGGARSGNPNRGSVAP 491


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = +3

Query: 219 GGARTGVGGRCRKQGRERRGTPCGCRRQSGGRLQSPGAGRGG 344
           GG R G  G  R   R  RG   G R   GG     G  +GG
Sbjct: 29  GGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70


>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 535 HGAVTVSANADTSDRDLIRIYKELCKS 455
           H A T+ AN    DRD+  IY+ + K+
Sbjct: 60  HDAPTIVANESLKDRDIDAIYQNIEKT 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,552
Number of Sequences: 5004
Number of extensions: 46397
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)