Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_L16
(848 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0507 + 21603472-21603750,21604371-21604463,21605046-216053... 33 0.29
01_06_0456 + 29521282-29522064 32 0.66
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 31 1.2
03_04_0006 + 16257288-16259522 30 2.7
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 2.7
06_03_0854 + 25400855-25403741,25406174-25407708 29 4.7
06_03_1448 + 30235336-30236763 29 6.2
06_03_1443 + 30182018-30183445 29 6.2
06_03_1440 + 30166515-30167942 29 6.2
06_03_1437 + 30151030-30152457 29 6.2
06_03_1429 + 30100834-30102261 29 6.2
06_03_1425 + 30084383-30085810 29 6.2
06_03_1420 - 30053713-30055140 29 6.2
06_03_0526 + 21771519-21771607,21771685-21771810,21771890-217720... 29 6.2
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 29 6.2
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 6.2
09_01_0117 + 1808669-1809181,1810038-1810059,1810170-1810223,181... 28 8.2
>06_03_0507 +
21603472-21603750,21604371-21604463,21605046-21605372,
21605588-21605863,21606095-21607114
Length = 664
Score = 33.1 bits (72), Expect = 0.29
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = -3
Query: 669 PPPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPP 541
PPP++LPA + P T + +R +AF +S R ++T RPP
Sbjct: 396 PPPLQLPAGEPPVTPAWNDTQRSKAFT---YSIRARKDTNRPP 435
>01_06_0456 + 29521282-29522064
Length = 260
Score = 31.9 bits (69), Expect = 0.66
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = -3
Query: 648 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 526
AW+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 252 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSL 398
G+ PR + D EW N PT+ ++ + +PRE Q+ K + L
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -3
Query: 459 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 307
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 276 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 175
LDDE YL R V + RLL+F++VD STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 459 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 334
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>06_03_1448 + 30235336-30236763
Length = 475
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 653 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 516
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 653 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 516
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 653 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 516
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 653 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 516
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 653 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 516
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 653 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 516
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 653 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 516
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_0526 +
21771519-21771607,21771685-21771810,21771890-21772010,
21772123-21772851,21772954-21773349,21774594-21774665,
21774741-21774803,21775236-21775337
Length = 565
Score = 28.7 bits (61), Expect = 6.2
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -3
Query: 714 AELALGHLRYSLTDVPPPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLE-RNTVRP 544
A +A L T PPP P W+ PR +R S RRA + ++A L R RP
Sbjct: 217 AAMAQAMLAVISTPAPPP---PLWRPPRRRARSSSSPRRATAFKAYNAALSPRARPRP 271
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = +2
Query: 545 GRTVFRSKR--AEW*RGGNARRRLKLPRDPVRGHCQA----GSLTGGG 670
G+T+ R R A W RG A RR +LP G +A GS +GGG
Sbjct: 36 GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLGSASGGG 83
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 581 TTLHAWNETPCARRYY 534
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>09_01_0117 +
1808669-1809181,1810038-1810059,1810170-1810223,
1810684-1810892
Length = 265
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -3
Query: 693 LRYSLTDVPPPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRP 544
L SL+ PPP + + P R S RR P H RL +V P
Sbjct: 13 LSLSLSRTPPPRRRLRLRTPTPCHRASTTRRALHTPPHQRTRLPPLSVAP 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,190,745
Number of Sequences: 37544
Number of extensions: 556042
Number of successful extensions: 1735
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1733
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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