Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_L15
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.5  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   2.6  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      27   2.6  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    26   6.0  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    26   7.9  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   7.9  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    26   7.9  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    26   7.9  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    26   7.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 353 ASALELPPRQDAAPPWSGDRIATRNPQRAPPLPGPREAS 237
           A ++ LPP+  +APP    R A    ++ PPL   R  S
Sbjct: 348 AGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVS 386


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -3

Query: 544  DEVQVATETAVSREHLRRSEGETSSVAIHPVREDRADRLDGPSSVGGVRQAARPR 380
            D   V + + +  ++L R     +S++   +  D  + +D PSS    R+  RPR
Sbjct: 1429 DSFAVQSSSELEDQYLERKRRRRNSISYTELTLDELNTVDDPSSTLMPRKRGRPR 1483


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 530 YLHLVARREPTPKCHHCSGCNEDTAEH 610
           Y HL    + +P+C HC    ED A H
Sbjct: 305 YCHLDYHEQFSPRCKHCKTPIEDQAVH 331


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
 Frame = +2

Query: 563 PKCHH--CSGCNEDTAEHTLAYCP 628
           P C H  CS C E   EH  + CP
Sbjct: 653 PNCGHAFCSNCMEPFYEHKTSTCP 676


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 518 CFGRYLHLVARREPTPKCHHCSGCNEDTAEHTLAYC 625
           C G+       R  T +C  CS  + +TAE+ L  C
Sbjct: 136 CLGKTAPSDKNRYTTTECLACSKISNETAENLLFLC 171


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 514  RLFRSLPAPRRPEGADAEVPPLQWLQR 594
            R F SL A   PEG     P L+WL+R
Sbjct: 1209 RQFDSLTASLYPEGCYQLKPVLEWLKR 1235


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 571 PPLQWLQRGHGGA 609
           P L W QRG+GGA
Sbjct: 341 PDLDWTQRGYGGA 353


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 578 CSGCNEDTAEHTLAYCPAFAEQRRVLVAKNRTGL 679
           C G N D A   ++YC    E ++   A++R GL
Sbjct: 18  CEG-NRDWAGAYVSYCKVLEEMKKSSAARDRMGL 50


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 249 GTWKRRRSLRITRGDAISAPGGSRVLARWKFERGSFNLGVPCS--GRGLAAWR 401
           GTW+   ++    G ++  P G  +  RW + R +F+  VP       L AWR
Sbjct: 154 GTWQGITNIVWGIGGSLGGPLGGLIAQRWGW-RTAFHFQVPMGILSTILVAWR 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,244
Number of Sequences: 5004
Number of extensions: 54506
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)