Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_L12
(955 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 42 8e-06
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 41 2e-05
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 39 6e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 39 6e-05
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 39 8e-05
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 38 1e-04
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 37 2e-04
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 37 2e-04
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 37 3e-04
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 37 3e-04
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 37 3e-04
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 37 3e-04
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 37 3e-04
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 37 3e-04
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 36 4e-04
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 36 4e-04
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 36 4e-04
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 34 0.002
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 32 0.007
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 32 0.009
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 26 0.58
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 25 1.0
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 9.4
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 41.9 bits (94), Expect = 8e-06
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Frame = +3
Query: 81 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLX 245
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 246 MNWIDKRLSWNAXEW-GCSTWLVSXERLWRPDVVL 347
+ W L+W + E+ ++ V +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 40.7 bits (91), Expect = 2e-05
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Frame = +3
Query: 81 CENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIRESESTVRILAD 239
C + D LL+ Y+R P S +VV L L L N+++ T +
Sbjct: 15 CHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILTTNVW-- 72
Query: 240 LXMNWIDKRLSWNAXEWGCSTWL-VSXERLWRPDVVL 347
L W D + W+ E+G T L V E +W PD+VL
Sbjct: 73 LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVL 109
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 39.1 bits (87), Expect = 6e-05
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Frame = +3
Query: 87 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLXMNW 254
N +++S ++D+LL YD PD V + + +R I E + T + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 255 IDKRLSWNAXEWGCSTWLVSXERLWRPDVVLLXG 356
+D+RL++ + + + R+W+PD G
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYNG 95
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 39.1 bits (87), Expect = 6e-05
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Frame = +3
Query: 81 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILAD 239
C + D LL+ Y++ P + LT+ ++ N++ T + +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLWVE 78
Query: 240 LXMNWIDKRLSWNAXEWGCSTWL-VSXERLWRPDVVL 347
+W D +L W+ E+G L V + +WRPD+VL
Sbjct: 79 --QSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVL 113
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 38.7 bits (86), Expect = 8e-05
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Frame = +3
Query: 108 MIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIRESESTVRILADLXMNWIDKR 266
+ D LL+ Y+R P ++ V + L L N++ T + + W D +
Sbjct: 24 LYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVWVE--QEWNDYK 81
Query: 267 LSWNAXEWG-CSTWLVSXERLWRPDVVL 347
L WN ++G T V E +W PD+VL
Sbjct: 82 LKWNPDDYGGVDTLHVPSEHIWLPDIVL 109
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 37.9 bits (84), Expect = 1e-04
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Frame = +3
Query: 108 MIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILADLXMNWIDKR 266
+ D LL+ Y+R P LT+ L N++ T + + W D +
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVE--QRWNDYK 94
Query: 267 LSWNAXEWGCSTWL-VSXERLWRPDVVL 347
L WN E+G L V E +W PD+VL
Sbjct: 95 LKWNPEEYGGVEMLYVPSENIWLPDIVL 122
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 37.1 bits (82), Expect = 2e-04
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = +3
Query: 108 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLXMNWIDKRLS 272
+++ LL++Y+ P + V + L+ ++ E + A L + W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 273 WNAXEW-GCSTWLVSXERLWRPDVVL 347
WN E+ G ++ +LW+PD+++
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILM 143
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 37.1 bits (82), Expect = 2e-04
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = +3
Query: 108 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLXMNWIDKRLS 272
+++ LL++Y+ P + V + L+ ++ E + A L + W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 273 WNAXEW-GCSTWLVSXERLWRPDVVL 347
WN E+ G ++ +LW+PD+++
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILM 143
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 36.7 bits (81), Expect = 3e-04
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 198 NIRESESTVRILADLXMNWIDKRLSWNAXEW-GCSTWLVSXERLWRPDVVL 347
++ E + A L + W+D L WN E+ G ++ +LW+PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 75
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 36.7 bits (81), Expect = 3e-04
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 198 NIRESESTVRILADLXMNWIDKRLSWNAXEW-GCSTWLVSXERLWRPDVVL 347
++ E + A L + W+D L WN E+ G ++ +LW+PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 75
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 36.7 bits (81), Expect = 3e-04
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 198 NIRESESTVRILADLXMNWIDKRLSWNAXEW-GCSTWLVSXERLWRPDVVL 347
++ E + A L + W+D L WN E+ G ++ +LW+PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 75
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 36.7 bits (81), Expect = 3e-04
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 198 NIRESESTVRILADLXMNWIDKRLSWNAXEW-GCSTWLVSXERLWRPDVVL 347
++ E + A L + W+D L WN E+ G ++ +LW+PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 75
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 36.7 bits (81), Expect = 3e-04
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 198 NIRESESTVRILADLXMNWIDKRLSWNAXEW-GCSTWLVSXERLWRPDVVL 347
++ E + A L + W+D L WN E+ G ++ +LW+PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 75
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 36.7 bits (81), Expect = 3e-04
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 198 NIRESESTVRILADLXMNWIDKRLSWNAXEW-GCSTWLVSXERLWRPDVVL 347
++ E + A L + W+D L WN E+ G ++ +LW+PD+++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILM 75
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 36.3 bits (80), Expect = 4e-04
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 108 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LXMNWIDKRLS 272
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ + +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 273 WNAXEWGCSTWL-VSXERLWRPDVVL 347
W E+G L V + +WRPD+VL
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVL 117
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 36.3 bits (80), Expect = 4e-04
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 108 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LXMNWIDKRLS 272
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ + +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 273 WNAXEWGCSTWL-VSXERLWRPDVVL 347
W E+G L V + +WRPD+VL
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVL 117
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 36.3 bits (80), Expect = 4e-04
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 162 IVVNLTLHLRHANIRESESTVRILADLXMNWIDKRLSWNAXEW-GCSTWLVSXERLWRPD 338
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 339 VVL 347
+L
Sbjct: 92 TIL 94
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 33.9 bits (74), Expect = 0.002
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 159 KIVVNLTL-HLRHANIRESESTVRILADLXMNWIDKRLSWNAXEW-GCSTWLVSXERLWR 332
K+ VN L ++ N+ E ++ L W D +L W+ ++ G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 333 PDVVL 347
PD+VL
Sbjct: 111 PDIVL 115
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 32.3 bits (70), Expect = 0.007
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 240 LXMNWIDKRLSWNAXEWGCSTWL-VSXERLWRPDVVL 347
L + W D + WN ++G L + RLW+PDV++
Sbjct: 76 LKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLM 112
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 31.9 bits (69), Expect = 0.009
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Frame = +3
Query: 96 SLSLMIDSLLATYDRESPPD----SKIVVNLTLHLRHAN-IRESESTVRILADLXMNWID 260
++++++++LL Y+ P + VV + +R + E + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 261 KRLSWNAXEWGCSTWLVSXERLWRPDVVLLXG 356
RLS+ S + ER+WRPD G
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYNG 127
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 25.8 bits (54), Expect = 0.58
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Frame = +3
Query: 87 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLXMNW 254
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 255 IDKRLSWNAXEWGCSTWLVSXE---RLWRPD 338
D RL++ G T V E +W PD
Sbjct: 68 TDPRLAFK-KRTGVETLSVGSEFIKNIWVPD 97
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 25.0 bits (52), Expect = 1.0
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Frame = +3
Query: 87 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHANIRESESTVRILADLXMN-- 251
N ++S ++DS +YD+ P+ + V +T+++ + SE + D
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSIS-SVSEVLMDFTLDFYFRQF 66
Query: 252 WIDKRLSWNAXEWGCSTWLVSXE---RLWRPD 338
W D RL++ G T V E +W PD
Sbjct: 67 WTDPRLAFK-KRTGVETLSVGSEFIKNIWVPD 97
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 9.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 305 PSAAAPFPCVPTQS 264
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,478
Number of Sequences: 438
Number of extensions: 2608
Number of successful extensions: 40
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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