Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_L11
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    28   1.6  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    27   4.9  
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    26   6.5  

>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
 Frame = +3

Query: 129 DLRQKLYALEDELWRNVSDPMWRQSDLGGDVELTKAFVALDELIQAVPRSRRPPLNSW-I 305
           DL++ L  L DE W N+ +P              + F A  + + A  R+    ++++ +
Sbjct: 132 DLKRGLSTLTDEDWNNIPEPGDLTRKKRTKQPRRERFYATSDFVLASARNENQAISNFAV 191

Query: 306 WTNAIEKMQIIDGHYKYFAEFARTQSRPGAVPAPVREWMDLTEAVLMDPKSSVT--NSM 476
            T A  +   ++G    F E    + +   +    +   +LT    +DPK  +T  NSM
Sbjct: 192 DTQAGTETPDMNGTKTNFVEIGAARDKVLGIKL-AQASSNLTSPSTIDPKGYLTSLNSM 249


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 354 YFAEFARTQSRPGAVPAPVREWMDLTE 434
           YF +  R QS P  +P PV   + LT+
Sbjct: 291 YFPQHRRFQSAPAPIPRPVSTLIPLTQ 317


>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -2

Query: 633 PFISX--QGLWCCKCRKSIDAGTSATCTRPCLPP 538
           PFI    Q + CC+C     + ++AT  + CLPP
Sbjct: 163 PFIGTMEQKVQCCQCLAISISYSTATSIQLCLPP 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,378,048
Number of Sequences: 5004
Number of extensions: 68785
Number of successful extensions: 250
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)