Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_L11
         (922 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   1.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   9.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   9.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   9.0  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 419 PFPNWRRNSAG 387
           P+PNW +N AG
Sbjct: 111 PYPNWAQNKAG 121


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 428 EVHPFPNWRRNSAGP*LRPRELGKVFVMSVDDLHFLDS 315
           ++ P+PNW  ++ G       + ++ V   D L  LDS
Sbjct: 227 KLRPYPNWEWHTVGNCDGLTSVFRIQVDECDRLWILDS 264


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 365 LGKVFVMSVDDLHFLDSVRPNPRVERGPSTPRYGLNQLV 249
           +G V  +SV        +RP    +  P T RYG + L+
Sbjct: 195 VGMVMYISVFKAEVGSKLRPRSSFQGPPFTYRYGFSFLL 233


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 291 LNSWIWTNAIEK 326
           +N+W+WT  IE+
Sbjct: 69  VNNWLWTPFIER 80


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 575 PASIDLRHLQHHSP 616
           PA+I + H  HH P
Sbjct: 454 PAAIQIGHTPHHHP 467


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,253
Number of Sequences: 438
Number of extensions: 5152
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)