Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_L09
         (873 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   1.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.4  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   6.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.4  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   8.5  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   8.5  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = -2

Query: 485 CPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAG-VLNGDERFRHVTTLH 309
           C  +P   S+ + L+   +  +  +   Q NSP  +   P H+G   +     R  ++++
Sbjct: 30  CTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTTSSMY 89

Query: 308 AWNETPCARRYYRPRTASA 252
            +     A  +++ + A A
Sbjct: 90  PYVSAAAAHHHHQQQQAVA 108


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 203 SSLKNHYFHCFITYSVGRK 259
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
 Frame = -1

Query: 210 SDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPK---------PVPLAVVLGTVGI 58
           +D R   SP   TP+ + Y   +E+ +  S F  D+P          P+     LG+ G 
Sbjct: 21  NDKRIYLSPR--TPIKNVYKNNIETKNQLSPFNIDTPNRQKILKDGFPIKCGTFLGSGGF 78

Query: 57  SLIH 46
            +++
Sbjct: 79  GIVY 82


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 706 SPIKRERELGLNRRXTGXFYPTDGLSLR 789
           SP++RE++ G     T     TDG   R
Sbjct: 313 SPLRREKDRGSREYPTSNATDTDGTKER 340


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 182 VGDRFARSSLKNHYFHCFI 238
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 182 VGDRFARSSLKNHYFHCFI 238
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,948
Number of Sequences: 438
Number of extensions: 5985
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)