Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_L08
(851 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 24 2.0
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 23 2.7
DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase doma... 23 4.7
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 4.7
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
DQ244075-1|ABB36785.1| 548|Apis mellifera cytochrome P450 monoo... 22 6.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.2
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 22 8.2
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 22 8.2
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 22 8.2
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 22 8.2
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 23.8 bits (49), Expect = 2.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 256 PKSLILMNLDNFCRSHGQVPAT 321
P+ L +NL + CR HG PAT
Sbjct: 430 PRELEAVNLGSACRIHGS-PAT 450
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 23.4 bits (48), Expect = 2.7
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 65 MSQCKPY*GDTANGSIYQFWFLRSYSVTRITVVILELIHAIRTLT 199
M C P DT +Y+F R Y + T VI + + TLT
Sbjct: 230 MYACCP--NDTYPMIVYEFSISRHYGILHATYVIPAVTMMLLTLT 272
>DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase domain
protein protein.
Length = 448
Score = 22.6 bits (46), Expect = 4.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 743 RPFGRVHEPNVRNCGSSRTEQYY 675
R FG V E N++ + TE+YY
Sbjct: 100 RHFGIVGECNIQYALNPNTEEYY 122
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.6 bits (46), Expect = 4.7
Identities = 10/46 (21%), Positives = 25/46 (54%)
Frame = +1
Query: 7 GLPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 144
G+PG + Y C + + ++ ++RR + +++VP +L++
Sbjct: 201 GVPGKRNEIYYNCCPEPYIDITFVVIIRRRTLYYFFNLIVPCVLIA 246
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.2 bits (45), Expect = 6.2
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 7 GLPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 144
G+PG Y C + + V+ +RR + +++VP +L+S
Sbjct: 164 GMPGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLIS 209
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 6.2
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 7 GLPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 144
G+PG Y C + + V+ +RR + +++VP +L+S
Sbjct: 164 GMPGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLIS 209
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 6.2
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 7 GLPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 144
G+PG Y C + + V+ +RR + +++VP +L+S
Sbjct: 164 GMPGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLIS 209
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.2 bits (45), Expect = 6.2
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 7 GLPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 144
G+PG Y C + + V+ +RR + +++VP +L+S
Sbjct: 164 GMPGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLIS 209
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 6.2
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 7 GLPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 144
G+PG Y C + + V+ +RR + +++VP +L+S
Sbjct: 164 GMPGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLIS 209
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 6.2
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 7 GLPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 144
G+PG Y C + + V+ +RR + +++VP +L+S
Sbjct: 164 GMPGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLIS 209
>DQ244075-1|ABB36785.1| 548|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 548
Score = 22.2 bits (45), Expect = 6.2
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -2
Query: 751 RTTGRSAECMNQMSETAVPLVLSS 680
+ G+ +C N MSE V ++L +
Sbjct: 170 KENGKEFDCHNYMSELTVDILLET 193
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 6.2
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 7 GLPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 144
G+PG Y C + + V+ +RR + +++VP +L+S
Sbjct: 232 GMPGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLIS 277
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 6.2
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 7 GLPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 144
G+PG Y C + + V+ +RR + +++VP +L+S
Sbjct: 232 GMPGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLIS 277
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.8 bits (44), Expect = 8.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 725 ALGRTAGGAKLPSAGLCLNASKAEASL 805
ALGR AGG S+ L L+ + +SL
Sbjct: 5 ALGRCAGGGGRLSSVLSLSLTSLASSL 31
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.8 bits (44), Expect = 8.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 725 ALGRTAGGAKLPSAGLCLNASKAEASL 805
ALGR AGG S+ L L+ + +SL
Sbjct: 5 ALGRCAGGGGRLSSVLSLSLTSLASSL 31
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.8 bits (44), Expect = 8.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 725 ALGRTAGGAKLPSAGLCLNASKAEASL 805
ALGR AGG S+ L L+ + +SL
Sbjct: 5 ALGRCAGGGGRLSSVLSLSLTSLASSL 31
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.8 bits (44), Expect = 8.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 725 ALGRTAGGAKLPSAGLCLNASKAEASL 805
ALGR AGG S+ L L+ + +SL
Sbjct: 5 ALGRCAGGGGRLSSVLSLSLTSLASSL 31
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,401
Number of Sequences: 438
Number of extensions: 5165
Number of successful extensions: 21
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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