Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_L06
         (899 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0466 + 3702771-3703016,3703133-3703196,3703757-3704055,370...    97   2e-20
03_02_0658 + 10228794-10228943,10229042-10229105,10229510-102298...    60   2e-09
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648...    30   2.2  
03_06_0544 + 34639419-34639455,34639763-34640096,34640186-34640480     30   2.9  
05_01_0142 - 940421-940701,941262-941574                               28   8.8  
01_01_0195 + 1697447-1697691,1698150-1698808,1699754-1701570,170...    28   8.8  

>05_01_0466 +
           3702771-3703016,3703133-3703196,3703757-3704055,
           3704666-3704881,3705216-3705422,3705697-3705789,
           3706098-3706196,3706300-3706329,3706885-3706938,
           3707533-3707586,3707658-3707735,3707927-3708018,
           3708093-3708150,3708248-3708322,3708930-3708977,
           3709131-3709228,3709446-3709521,3709659-3709721,
           3709810-3709901,3710207-3710275,3710410-3710473,
           3710545-3710610,3710700-3710777
          Length = 772

 Score = 97.1 bits (231), Expect = 2e-20
 Identities = 46/115 (40%), Positives = 73/115 (63%)
 Frame = +2

Query: 170 KLFFVESICDDPRIIEQNIMEVKVSSPDYTNIQNTDNVLNDFMLRIEHYKEKYEPLDESL 349
           K+ F+E+IC+DP IIE+N+      SPDY +  + +  + DF  R+ +Y++ YEP+ E  
Sbjct: 480 KIIFLETICNDPNIIERNVRLKIQQSPDYADQPDYETGVRDFKERLANYEKVYEPVQEGS 539

Query: 350 ESEYSFMKIYDTGEKVVVHKHEGHIQSRIVYYLMNIHIVPRTIYLTRHGESLHNL 514
             +   M +   G ++ V+   G++  RIV++L+N H+ PR I LTRHGESLHN+
Sbjct: 540 YIKMIDM-VKGQGGQLQVNNISGYLPGRIVFFLVNSHLTPRPILLTRHGESLHNV 593



 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 19/43 (44%), Positives = 29/43 (67%)
 Frame = +1

Query: 10  EAMAIRQQCALDALQDVCEWLTKGGEVAVFDATNSTLDRRRMI 138
           E +  R + A  A++D+ +W+  GG+V +FDATNST  RR M+
Sbjct: 429 EGIEARNEVAALAMEDMIDWMHGGGQVGIFDATNSTRKRRYML 471



 Score = 32.3 bits (70), Expect = 0.54
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = +3

Query: 519 GRIGGDSPLSPRGCQYARALSAYIEQ--QRIPGLRVWTSWMXPCHTDGPRTSRPPXERWX 692
           GR+GGD+ LS  G  Y++ L+ +IE+  +      +WTS +             P  +W 
Sbjct: 595 GRVGGDTVLSEDGELYSKKLANFIEKRLKSEKTASIWTSTLQRTILTASPIVGFPKIQWR 654

Query: 693 ALXRRSNXGXCXRDGHP-XEIPEXLP 767
           AL    N G C  DG    EI + +P
Sbjct: 655 ALD-EINSGVC--DGMTYEEIKKVMP 677


>03_02_0658 +
           10228794-10228943,10229042-10229105,10229510-10229805,
           10230689-10230904,10231409-10231549,10232407-10232499,
           10234010-10234108,10234198-10234227,10234274-10234360,
           10234636-10234689,10234758-10234835,10235128-10235202,
           10236265-10236356,10236433-10236490,10236590-10236664,
           10236966-10237013,10239003-10239065,10239167-10239258,
           10239693-10239761,10239867-10239930,10240007-10240072,
           10240170-10240271
          Length = 703

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 32/103 (31%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
 Frame = +2

Query: 173 LFFVESICDDPRIIEQNIMEVKVS-SPDYTNIQNTDNVLNDFMLRIEHYKEKYEPLDESL 349
           + F+E+IC+D  ++E+N M +KV  SPDY    + +  + DF  R+ +Y++ YEP++E  
Sbjct: 462 IIFLETICNDQNVLERN-MRLKVQRSPDYAEQTDFEAGVRDFKERLAYYEKVYEPVEEGS 520

Query: 350 ESEYSFMKIYDTGEKVVVHKHEGHIQSRIVYYLMNIHIVPRTI 478
             +   M +  TG ++ ++   G++  RIV++L+    + R+I
Sbjct: 521 YVKMIDM-VSGTGGQLQINDISGYLPGRIVFFLIWTSTLQRSI 562



 Score = 50.0 bits (114), Expect = 3e-06
 Identities = 20/44 (45%), Positives = 31/44 (70%)
 Frame = +1

Query: 7   KEAMAIRQQCALDALQDVCEWLTKGGEVAVFDATNSTLDRRRMI 138
           KE +  R + A  A++D+  W+ +GG+V +FDATNST +RR M+
Sbjct: 384 KEGVEARNEVAALAMEDMLSWMQEGGQVGIFDATNSTRNRRNML 427


>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
            31165816-31167650,31169294-31169424,31169993-31170075,
            31170426-31170680,31171125-31171220,31171695-31171775,
            31171811-31171968,31172434-31172534,31172614-31172629,
            31173390-31173439,31174558-31174588,31175156-31175305,
            31176135-31176173,31176288-31176410,31176496-31176552,
            31176837-31176911,31177003-31177107
          Length = 1496

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +3

Query: 489  GTARACTTWVGRIGGDSPLSPRGCQYARALSAYIEQQRIPGLRVW 623
            G+ ++  T  GR GG     PRG +  + LS  IE++ +PGLR++
Sbjct: 945  GSWQSSLTRRGRYGG----RPRGRKPRKNLSETIEEEEVPGLRLY 985


>03_06_0544 + 34639419-34639455,34639763-34640096,34640186-34640480
          Length = 221

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 654 GPRTSRPPXERWXALXRRSNXGXCXRDGHPXEIPEXLPXGIS 779
           GPR  R P +   ++ R S  G   R G   E+P+ L  G S
Sbjct: 153 GPRRQRTPMQADGSVVRWSGLGGGCRSGRSDEVPQRLAVGQS 194


>05_01_0142 - 940421-940701,941262-941574
          Length = 197

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 817 PPGGXTQHGTXWPXXGPGXSG 879
           PPGG  QHG   P   PG SG
Sbjct: 82  PPGGYPQHGGYPPAGYPGSSG 102


>01_01_0195 +
           1697447-1697691,1698150-1698808,1699754-1701570,
           1701700-1701771
          Length = 930

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 362 SFMKIYDTGEKVVVHKHEGHIQSRIVYYLMNIHIVPRTIYLTRHGESLHNLGRA 523
           S+  ++DT  KVVV + EG ++       +N+H+   TI   + G ++    RA
Sbjct: 726 SWYNLFDT-TKVVVSRGEGAVKLDAPLNEINVHVFQNTILPMQRGGTISKEARA 778


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,235,593
Number of Sequences: 37544
Number of extensions: 488941
Number of successful extensions: 1204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)