Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_L04
(844 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 31 1.1
08_02_0600 - 19166283-19166851,19166988-19168839,19169347-191694... 30 2.7
06_03_1448 + 30235336-30236763 30 2.7
06_03_1443 + 30182018-30183445 30 2.7
06_03_1440 + 30166515-30167942 30 2.7
06_03_1437 + 30151030-30152457 30 2.7
06_03_1429 + 30100834-30102261 30 2.7
06_03_1425 + 30084383-30085810 30 2.7
06_03_1420 - 30053713-30055140 30 2.7
03_04_0006 + 16257288-16259522 30 2.7
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 2.7
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 29 3.5
06_03_0854 + 25400855-25403741,25406174-25407708 29 4.6
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 6.1
06_01_0183 + 1422798-1422829,1422989-1423239,1423669-1423945,142... 29 6.1
01_06_0456 + 29521282-29522064 29 6.1
02_01_0490 + 3541056-3542276 28 8.1
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 309 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSL 455
G+ PR + D EW N PT+ ++ + +PRE Q+ K + L
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441
>08_02_0600 -
19166283-19166851,19166988-19168839,19169347-19169415,
19171797-19171844,19173500-19173622
Length = 886
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 28 PGPAFSGLPRIFLAV-RSCRFRFVRDRHDSVRPPFNG 135
P P ++GLPR F R C+ +D H V PP G
Sbjct: 222 PPPPYTGLPRAFFGQHRGCKVTLYQDAH--VAPPLAG 256
>06_03_1448 + 30235336-30236763
Length = 475
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 713 NSPPGSVXEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 573
N PP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 713 NSPPGSVXEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 573
N PP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 713 NSPPGSVXEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 573
N PP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 713 NSPPGSVXEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 573
N PP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 713 NSPPGSVXEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 573
N PP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 713 NSPPGSVXEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 573
N PP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 713 NSPPGSVXEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 573
N PP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -2
Query: 516 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 364
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 333 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 232
LDDE YL R V + RLL+F++VD STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 725 PPQSNSPPGSVXEPDHAGVLNGDE 654
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 516 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 391
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 6.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 638 TTLHAWNETPCARRYY 591
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>06_01_0183 +
1422798-1422829,1422989-1423239,1423669-1423945,
1424827-1425034,1425129-1425203,1425301-1425375,
1425494-1425574,1425666-1425740,1425829-1426002,
1426105-1426134
Length = 425
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 10 YVSDLDPGPAFSGLPRIFLAVRSCR-FRFVRDRHDSVRPPFNG 135
+VS+ PGPA + LA + R F+FV D H + PP G
Sbjct: 229 FVSNGQPGPAQNVDKSTSLARKVFRLFKFVNDLHALISPPAKG 271
>01_06_0456 + 29521282-29522064
Length = 260
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = -2
Query: 705 AWQCXR--TGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 583
AW+C +G+RG +RRR P S R R +T+RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>02_01_0490 + 3541056-3542276
Length = 406
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 656 RRRLKLPRDPVRXHCQAGSLTGAVHLSXNNAGVLRPAQRXQKPP 787
R RL+L R + H A + A ++ A + PA+R PP
Sbjct: 244 RPRLRLVRSQPQPHPPAAAAAAAAAVAKPRAAIQSPARRRPSPP 287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,115,126
Number of Sequences: 37544
Number of extensions: 544141
Number of successful extensions: 1651
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1649
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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