Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_L02
(858 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0377 - 4970034-4970687 37 0.024
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377... 32 0.51
03_05_0507 + 25017031-25017333,25017397-25017855 32 0.51
12_01_0018 + 132654-133304,133726-134265,134357-134436,134673-13... 30 2.1
09_02_0045 + 3479503-3480285 30 2.1
04_04_0630 - 26719136-26719150,26720065-26720134,26720438-26721912 30 2.1
11_01_0019 + 135610-136296,136736-137275,137367-137518,137683-13... 29 3.6
03_01_0612 - 4501595-4501619,4501752-4501906,4502051-4502092,450... 29 4.7
02_04_0413 + 22681957-22682035,22682253-22682788 29 4.7
07_03_1583 - 27898375-27898436,27898455-27898539,27898621-278987... 29 6.3
07_03_1736 + 29130118-29130294,29130649-29130703,29130837-291310... 24 7.0
04_04_1335 - 32730516-32730570,32730655-32731154,32731235-327314... 28 8.3
04_04_1268 - 32262994-32263017,32263411-32263488,32263653-322638... 28 8.3
>04_01_0377 - 4970034-4970687
Length = 217
Score = 36.7 bits (81), Expect = 0.024
Identities = 29/110 (26%), Positives = 38/110 (34%), Gaps = 5/110 (4%)
Frame = +2
Query: 461 LRRGHCVEPTCSPACDSYSSC-TDFNVCTCVNNTIALNGSQC---APVCPDGYYNDPVEC 628
L R +C S AC S C + TC NN C + C G N P
Sbjct: 44 LGRDYCGTGCQSGACCSSQRCGSQGGGATCSNNQCCSQYGYCGFGSEYCGSGCQNGPCRA 103
Query: 629 SPRCERCVNGTCTEPGLCTCDSGYKNI-DDVCVPQCLDXRNGECVAPNDC 775
+C R NG +C GY + + C C ++G C C
Sbjct: 104 DIKCGRNANGELCPNNMCCSQWGYCGLGSEFCGNGC---QSGACCPEKRC 150
>03_05_1019 +
29736644-29736709,29737156-29737515,29737595-29737735,
29737912-29738044,29738344-29738457,29738553-29738701,
29740815-29740907,29741019-29741079,29741180-29741512,
29742149-29742224,29742322-29742421,29743300-29743369,
29743987-29744082,29744355-29744402,29744427-29744658,
29745186-29745246,29745265-29745375
Length = 747
Score = 32.3 bits (70), Expect = 0.51
Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Frame = +2
Query: 518 SCTDFNVC---TCVNNTIALNGSQCAPVCPD--GYYNDPV---ECSPRCERCVNGTCTEP 673
S T N C C NN++ + CP G P C +C +G C
Sbjct: 524 SMTQGNGCYQHRCTNNSLEVAVDGIWKSCPQTGGPVQFPGFNGSCPAKCTG--HGICKAN 581
Query: 674 GLCTCDSGYKNID---DVCVPQCLDXRNGEC 757
G+C C+SG+ ID VC QC G C
Sbjct: 582 GICECESGWTGIDCSTAVCDEQC-SLHGGVC 611
>03_05_0507 + 25017031-25017333,25017397-25017855
Length = 253
Score = 32.3 bits (70), Expect = 0.51
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 325 NAHV*FGYNARAAVSL--AATSFLIVDQTSALPYDRYVHGGNSF 200
NA Y+ARAA S+ A L V +A+P DR+ H G+ F
Sbjct: 117 NAQAYHAYHARAAASVRVAVHDALFVRDLAAIPEDRWAHDGDYF 160
>12_01_0018 +
132654-133304,133726-134265,134357-134436,134673-134949
Length = 515
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -3
Query: 304 YNARAAVSL--AATSFLIVDQTSALPYDRYVHGGNSF 200
Y+ARAA S+ AA L +A+P DR+ H G+ F
Sbjct: 81 YHARAAASVRVAAHDALFARDLAAIPEDRWAHDGDYF 117
>09_02_0045 + 3479503-3480285
Length = 260
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +2
Query: 482 EPTCS---PACDSYSSCTDFNVCTCVNNTIALNGSQ 580
EP+CS P+ + C D ++ C N+IAL+G Q
Sbjct: 186 EPSCSKIVPSNEPCVRCKDIDINACATNSIALSGLQ 221
>04_04_0630 - 26719136-26719150,26720065-26720134,26720438-26721912
Length = 519
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +2
Query: 446 PEPLVLRRGHCVEPTCSPACDSYSSCTDFNVCTCVNNTI-ALNGSQCAP-VCPDGYY 610
P P+ RR C P CS A +SS ++C + A+ CA CP YY
Sbjct: 141 PPPIDSRRISCASPLCSAA---HSSAPTSDLCAAARCPLDAIETDSCASHACPPLYY 194
>11_01_0019 +
135610-136296,136736-137275,137367-137518,137683-137959
Length = 551
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -3
Query: 304 YNARAAVSL--AATSFLIVDQTSALPYDRYVHGGNSF 200
Y+ARAA S+ AA + L +A+P D++ H G+ F
Sbjct: 93 YHARAAASVRVAAHNALFARDLAAIPEDKWAHDGDYF 129
>03_01_0612 -
4501595-4501619,4501752-4501906,4502051-4502092,
4502238-4502279,4502365-4502464,4502825-4502889,
4503140-4503217
Length = 168
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 352 LDIRGEDRQLCTEMHERVRERN--LRGARGVHLSRASGPQTRTL 477
LD++GED C + E + E + LR RG L R + Q + L
Sbjct: 23 LDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQEL 66
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 29.1 bits (62), Expect = 4.7
Identities = 27/102 (26%), Positives = 35/102 (34%), Gaps = 2/102 (1%)
Frame = +2
Query: 389 KCTSGCVNGTCEAPEVCTCPEPL--VLRRGHCVEPTCSPACDSYSSCTDFNVCTCVNNTI 562
K GC G + + CP P CV P C C+S + C N C+
Sbjct: 71 KFGGGCCCGAGCSEQCAECPRPPHPPPSPSPCVHPPC---CESAAGCC-CNGCSGGG--- 123
Query: 563 ALNGSQCAPVCPDGYYNDPVECSPRCERCVNGTCTEPGLCTC 688
G QC P ++ P + C C G C P C
Sbjct: 124 -CGGGQCPPSPSCENHHPPCKPGCCCCGCSGGECPPPPSPPC 164
>07_03_1583 -
27898375-27898436,27898455-27898539,27898621-27898768,
27899009-27899028,27899135-27899236,27899743-27899812,
27899956-27900012,27902324-27902484,27902742-27902761,
27902997-27903069,27903077-27903169,27903456-27903496,
27903597-27903858
Length = 397
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +1
Query: 337 IMQDWLDIRGEDRQLCTEMHERVRERNLRGARGVHLSRASGPQTRTLRGAH 489
I+ DW+D ++R + +MH E+ L+G+ GV L+ + +TR + H
Sbjct: 133 IVTDWVDY--QNRLVRGDMHS---EKPLKGSGGVSLANGNTTETRLRKRCH 178
>07_03_1736 +
29130118-29130294,29130649-29130703,29130837-29131048,
29131201-29131322,29131406-29131559,29131849-29131918,
29132007-29132152,29132238-29132310,29132366-29132418,
29132514-29132658,29132945-29133063,29133171-29133242,
29133336-29133439,29133695-29133751,29133861-29134059,
29134169-29134312,29134418-29134537
Length = 673
Score = 23.8 bits (49), Expect(2) = 7.0
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 301 NARAAVSLAATSFLIVDQTSALPYDRYV-HG 212
N+R ++ + + + +DQ S +P D Y+ HG
Sbjct: 213 NSRLQLTTSKSGVIWLDQVSVMPSDTYMGHG 243
Score = 23.0 bits (47), Expect(2) = 7.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 103 FRRDRLQSLSQLKPQF 56
FR+D L+ LKPQF
Sbjct: 244 FRKDLASMLANLKPQF 259
>04_04_1335 -
32730516-32730570,32730655-32731154,32731235-32731416,
32732673-32732779,32733364-32733395,32733499-32733542,
32733816-32733977,32734356-32734755
Length = 493
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 92 IASEREHRAMLCGNVLSVLLFVIGERSLFCDAIKDGK 202
+A + HR L +VLSV +F + DAIK GK
Sbjct: 421 VADQVGHRVRLSPSVLSVFVFSSAAIAFTYDAIKSGK 457
>04_04_1268 -
32262994-32263017,32263411-32263488,32263653-32263800,
32263890-32264127,32264210-32264420,32264499-32264680,
32264765-32264866,32265009-32266317,32266906-32266988,
32267436-32267559
Length = 832
Score = 28.3 bits (60), Expect = 8.3
Identities = 30/103 (29%), Positives = 38/103 (36%), Gaps = 10/103 (9%)
Frame = +2
Query: 485 PTCSPACDSYSSCTDFNVCTCVNNTIALNGSQCAPVCPDGYYNDPVECSPRCE-----RC 649
P CD Y SC F C + T + Q CPDG+ + S C RC
Sbjct: 364 PAAIGDCDPYGSCGPFGYC---DFTSVIPRCQ----CPDGFEPNGSNSSSGCRRKQQLRC 416
Query: 650 VNGT--CTEPGLCTCDSGYKNID---DVCVPQCLDXRNGECVA 763
G T PG+ D + D + C +C RN C A
Sbjct: 417 GEGNHFMTMPGMKLPDKFFYVQDRSFEECAAEC--SRNCSCTA 457
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,497,373
Number of Sequences: 37544
Number of extensions: 456726
Number of successful extensions: 1339
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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