Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_L01
         (1341 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0479 + 3606663-3607448                                           34   0.22 
11_06_0610 - 25449085-25453284                                         29   8.3  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   8.3  

>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 34.3 bits (75), Expect = 0.22
 Identities = 24/76 (31%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
 Frame = -2

Query: 1130 PPXKKPPXGXKKXPGXXKKNPXXPFXNFX*XPGGKKXGPXKXP-PFXRGKTSPRXLXKXP 954
            P   +PP G    P    + P  PF      P     GP   P PF RG          P
Sbjct: 164  PQVVRPPPGQMPPPMRPPQMPI-PFQRPPGVPPAFPGGPPPPPGPFMRGPPPMGPPQVRP 222

Query: 953  XXPGGXPXGKTXGFSP 906
              PGG P G   G  P
Sbjct: 223  GMPGGPPPGMRPGMPP 238


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 23/92 (25%), Positives = 27/92 (29%), Gaps = 4/92 (4%)
 Frame = -2

Query: 1130 PPXKKPPXGXKKXPGXXKKNPXXPFXNFX*XPGGKKXGPXKXPPFXRGKTS----PRXLX 963
            PP   PP G        K +P      +   P        K PP    K S    P    
Sbjct: 576  PPKSGPPAGESPPTPESKASPPPTPEEYTPSPPKSTPPAEKSPPTPESKASSPPPPAPEG 635

Query: 962  KXPXXPGGXPXGKTXGFSPXXKLSXXXPGNPE 867
              P  P   P  +    +P  K S   P  PE
Sbjct: 636  HTPSPPESTPPSEKSPPTPESKASSPPPPTPE 667


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 17/44 (38%), Positives = 17/44 (38%)
 Frame = -2

Query: 1130 PPXKKPPXGXKKXPGXXKKNPXXPFXNFX*XPGGKKXGPXKXPP 999
            PP   PP    K P      P  P       PGGKK GP   PP
Sbjct: 340  PPKGPPPPPPAKGPPPPPP-PKGPSPPPPPPPGGKKGGPPPPPP 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,986,231
Number of Sequences: 37544
Number of extensions: 185155
Number of successful extensions: 232
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4213554024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)