Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_K09
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    27   3.5  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   4.6  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    27   4.6  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    26   8.0  
SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su...    26   8.0  
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    26   8.0  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    26   8.0  

>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 1   YWEYKHDGNKPSN 39
           YWE  +DGNKPS+
Sbjct: 178 YWENAYDGNKPSS 190


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 109  SYASPRWYGNANDRTNAYESNGSRSNVSR 195
            S  S RW  N N   N   SN + +NVSR
Sbjct: 1467 SQKSDRWRQNGNVNRNPRVSNNNSTNVSR 1495


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 21/95 (22%), Positives = 39/95 (41%)
 Frame = +3

Query: 240 IYQNAQNNQSSTTEQRVFTGTITKTHNDFGFVDHDVFYQTSVCAKGIIPKINDRVLVEAT 419
           I +   ++    T  R+    + KT   FGFVD     ++S   +GI+ +  +  L EA 
Sbjct: 64  ITRETDSSAHQETRTRLEENNLPKTQK-FGFVDWKTILKSSAEFQGIVQRDPESRLREAL 122

Query: 420 FNPNMPFKWNATRVQVLPKAGACQKPPPTKSNSYN 524
                  K     ++ +P    C+      +N++N
Sbjct: 123 ETDPKLKKRLECILETIPPWDVCESLLKVYANTFN 157


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 37  NNGSQRHDDTTKHDALSTDSSNV*SYASPRWYGNANDRTNAYESN 171
           NNG+Q+ + T   D    +S ++ S +S  + G      N  ESN
Sbjct: 549 NNGNQQSERTESADGKKDNSGSISSNSSKTFTGKRVRLGNVIESN 593


>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
           subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 484 LVKNLRLPKVT-LIMQYHHHRSQGKRLHQDVMSVPQEEMTEKDPEQEAELGLEIDV 648
           LV + R+  VT L + Y    ++    H  + SVP + + E+DP  E  + LE +V
Sbjct: 85  LVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNV 140


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 251 ILVDNRGLMHAALDMPQHYRETFDLEPFDS*AFVLSFAL 135
           I++ N+G  +A + M + + +  DL+P+ S A  L  A+
Sbjct: 176 IVIPNKGDANAVMHMNKFHYDVIDLDPYGSAAPFLDAAV 214


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 38  IMDPNAMMTQQSMMPFQQTQAMFN 109
           I+DP+A   +QS + F++   +FN
Sbjct: 96  ILDPDADFVKQSSLAFEKASVLFN 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,302,814
Number of Sequences: 5004
Number of extensions: 66667
Number of successful extensions: 189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)