Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_J24
         (938 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X70944-1|CAA50283.1|  707|Homo sapiens PTB-associated splicing f...    34   0.65 
BC051192-1|AAH51192.1|  707|Homo sapiens splicing factor proline...    34   0.65 
BC027708-1|AAH27708.1|  525|Homo sapiens SFPQ protein protein.         34   0.65 
BC004534-1|AAH04534.2|  634|Homo sapiens SFPQ protein protein.         34   0.65 
AL590434-2|CAI12467.1|  707|Homo sapiens splicing factor proline...    34   0.65 
BC038446-1|AAH38446.1|  673|Homo sapiens SF1 protein protein.          31   6.0  
BC002767-1|AAH02767.1|  690|Homo sapiens LATS1 protein protein.        31   6.0  
AF164041-1|AAD50272.1| 1130|Homo sapiens WARTS protein kinase pr...    31   6.0  
AF104413-1|AAD16882.1| 1130|Homo sapiens large tumor suppressor ...    31   6.0  
AB209426-1|BAD92663.1|  830|Homo sapiens LATS homolog 1 variant ...    31   6.0  
AL834396-1|CAD39058.1| 1009|Homo sapiens hypothetical protein pr...    31   8.0  
AB067489-1|BAB67795.1| 1112|Homo sapiens KIAA1902 protein protein.     31   8.0  

>X70944-1|CAA50283.1|  707|Homo sapiens PTB-associated splicing
           factor protein.
          Length = 707

 Score = 34.3 bits (75), Expect = 0.65
 Identities = 17/55 (30%), Positives = 20/55 (36%)
 Frame = -2

Query: 772 PPAXXCXXXAXXGXXXXXTPXPPPXXXTPPPXXXXPXPXRXXPXXXPPRSXXDXP 608
           PPA      A  G     TP PPP   + PP    P P        PP++    P
Sbjct: 132 PPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPP 186


>BC051192-1|AAH51192.1|  707|Homo sapiens splicing factor
           proline/glutamine-rich (polypyrimidine tract binding
           protein as protein.
          Length = 707

 Score = 34.3 bits (75), Expect = 0.65
 Identities = 17/55 (30%), Positives = 20/55 (36%)
 Frame = -2

Query: 772 PPAXXCXXXAXXGXXXXXTPXPPPXXXTPPPXXXXPXPXRXXPXXXPPRSXXDXP 608
           PPA      A  G     TP PPP   + PP    P P        PP++    P
Sbjct: 132 PPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPP 186


>BC027708-1|AAH27708.1|  525|Homo sapiens SFPQ protein protein.
          Length = 525

 Score = 34.3 bits (75), Expect = 0.65
 Identities = 17/55 (30%), Positives = 20/55 (36%)
 Frame = -2

Query: 772 PPAXXCXXXAXXGXXXXXTPXPPPXXXTPPPXXXXPXPXRXXPXXXPPRSXXDXP 608
           PPA      A  G     TP PPP   + PP    P P        PP++    P
Sbjct: 132 PPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPP 186


>BC004534-1|AAH04534.2|  634|Homo sapiens SFPQ protein protein.
          Length = 634

 Score = 34.3 bits (75), Expect = 0.65
 Identities = 17/55 (30%), Positives = 20/55 (36%)
 Frame = -2

Query: 772 PPAXXCXXXAXXGXXXXXTPXPPPXXXTPPPXXXXPXPXRXXPXXXPPRSXXDXP 608
           PPA      A  G     TP PPP   + PP    P P        PP++    P
Sbjct: 59  PPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPP 113


>AL590434-2|CAI12467.1|  707|Homo sapiens splicing factor
           proline/glutamine-rich (polypyrimidine tract binding
           protein as protein.
          Length = 707

 Score = 34.3 bits (75), Expect = 0.65
 Identities = 17/55 (30%), Positives = 20/55 (36%)
 Frame = -2

Query: 772 PPAXXCXXXAXXGXXXXXTPXPPPXXXTPPPXXXXPXPXRXXPXXXPPRSXXDXP 608
           PPA      A  G     TP PPP   + PP    P P        PP++    P
Sbjct: 132 PPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPP 186


>BC038446-1|AAH38446.1|  673|Homo sapiens SF1 protein protein.
          Length = 673

 Score = 31.1 bits (67), Expect = 6.0
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -2

Query: 715 PXPPPXXXTPPPXXXXPXPXRXXPXXXPP 629
           P PPP    PPP    P P    P   PP
Sbjct: 74  PPPPPPPQQPPPPPPPPSPGASYPPPQPP 102


>BC002767-1|AAH02767.1|  690|Homo sapiens LATS1 protein protein.
          Length = 690

 Score = 31.1 bits (67), Expect = 6.0
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -2

Query: 718 TPXPPPXXXTPPPXXXXPXPXRXXP 644
           TP PPP   TPPP    P P    P
Sbjct: 246 TPPPPPRGQTPPPRGTTPPPPSWEP 270


>AF164041-1|AAD50272.1| 1130|Homo sapiens WARTS protein kinase
           protein.
          Length = 1130

 Score = 31.1 bits (67), Expect = 6.0
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -2

Query: 718 TPXPPPXXXTPPPXXXXPXPXRXXP 644
           TP PPP   TPPP    P P    P
Sbjct: 246 TPPPPPRGQTPPPRGTTPPPPSWEP 270


>AF104413-1|AAD16882.1| 1130|Homo sapiens large tumor suppressor 1
           protein.
          Length = 1130

 Score = 31.1 bits (67), Expect = 6.0
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -2

Query: 718 TPXPPPXXXTPPPXXXXPXPXRXXP 644
           TP PPP   TPPP    P P    P
Sbjct: 246 TPPPPPRGQTPPPRGTTPPPPSWEP 270


>AB209426-1|BAD92663.1|  830|Homo sapiens LATS homolog 1 variant
           protein.
          Length = 830

 Score = 31.1 bits (67), Expect = 6.0
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -2

Query: 718 TPXPPPXXXTPPPXXXXPXPXRXXP 644
           TP PPP   TPPP    P P    P
Sbjct: 98  TPPPPPRGQTPPPRGTTPPPPSWEP 122


>AL834396-1|CAD39058.1| 1009|Homo sapiens hypothetical protein
           protein.
          Length = 1009

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 14/44 (31%), Positives = 15/44 (34%)
 Frame = -2

Query: 775 LPPAXXCXXXAXXGXXXXXTPXPPPXXXTPPPXXXXPXPXRXXP 644
           LPP+         G      P PPP    PPP    P P    P
Sbjct: 449 LPPSSDTPETVQNGPVTPPMPPPPPPPPPPPPPPPPPPPPPPLP 492


>AB067489-1|BAB67795.1| 1112|Homo sapiens KIAA1902 protein protein.
          Length = 1112

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 14/44 (31%), Positives = 15/44 (34%)
 Frame = -2

Query: 775 LPPAXXCXXXAXXGXXXXXTPXPPPXXXTPPPXXXXPXPXRXXP 644
           LPP+         G      P PPP    PPP    P P    P
Sbjct: 552 LPPSSDTPETVQNGPVTPPMPPPPPPPPPPPPPPPPPPPPPPLP 595


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,941,150
Number of Sequences: 237096
Number of extensions: 1560291
Number of successful extensions: 9336
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7685
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12325533684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)