Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_J22
(881 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF103220-1|AAD30780.1| 121|Homo sapiens immunoglobulin heavy ch... 33 1.8
X79683-1|CAA56130.1| 1798|Homo sapiens beta2/S laminin chain pro... 32 3.2
U29175-1|AAB40977.1| 1647|Homo sapiens transcriptional activator... 32 3.2
D26156-1|BAA05143.1| 1647|Homo sapiens transcriptional activator... 32 3.2
BC150298-1|AAI50299.1| 1647|Homo sapiens SWI/SNF related, matrix... 32 3.2
BC139924-1|AAI39925.1| 584|Homo sapiens SMARCA4 protein protein. 32 3.2
BC139917-1|AAI39918.1| 584|Homo sapiens SMARCA4 protein protein. 32 3.2
AF254822-2|AAG24789.1| 1647|Homo sapiens SMARCA4 isoform 1 protein. 32 3.2
AF254822-1|AAG24790.1| 1679|Homo sapiens SMARCA4 isoform 2 protein. 32 3.2
AB209313-1|BAD92550.1| 1164|Homo sapiens SWI/SNF-related matrix-... 32 3.2
DQ100819-1|AAZ08826.1| 122|Homo sapiens immunoglobulin heavy ch... 31 4.2
AK090401-1|BAC03382.1| 176|Homo sapiens FLJ00278 protein protein. 31 5.5
BC131591-1|AAI31592.1| 890|Homo sapiens PACS2 protein protein. 30 9.7
AY393339-1|AAR32394.1| 157|Homo sapiens immunoglobulin heavy ch... 30 9.7
>AF103220-1|AAD30780.1| 121|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 121
Score = 32.7 bits (71), Expect = 1.8
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 375 LFADDTTVYYSSRNKSLIAKKLQSAALGQWFRKWRIDINPAKS 503
L A+DT VYY +R + AK + +A LG W + + ++ A +
Sbjct: 76 LRAEDTAVYYCARRAAGTAKTVDTAMLGYWGQGTLVTVSSAST 118
>X79683-1|CAA56130.1| 1798|Homo sapiens beta2/S laminin chain
protein.
Length = 1798
Score = 31.9 bits (69), Expect = 3.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 767 KCHLVPKGHFTPLTDHGVESTENKRGTVTD 678
+C V G+F P DH + EN RG V D
Sbjct: 551 RCEQVQPGYFRPFLDHLIWEAENTRGQVLD 580
>U29175-1|AAB40977.1| 1647|Homo sapiens transcriptional activator
protein.
Length = 1647
Score = 31.9 bits (69), Expect = 3.2
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 192 PARPCKYPWPANGAARTVAP-STASSLAPPIPVARP 88
P P K PWP A AP ST L PP P RP
Sbjct: 277 PGGPPK-PWPEGPMANAAAPTSTPQKLIPPQPTGRP 311
>D26156-1|BAA05143.1| 1647|Homo sapiens transcriptional activator
hSNF2b protein.
Length = 1647
Score = 31.9 bits (69), Expect = 3.2
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 192 PARPCKYPWPANGAARTVAP-STASSLAPPIPVARP 88
P P K PWP A AP ST L PP P RP
Sbjct: 277 PGGPPK-PWPEGPMANAAAPTSTPQKLIPPQPTGRP 311
>BC150298-1|AAI50299.1| 1647|Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, sub
protein.
Length = 1647
Score = 31.9 bits (69), Expect = 3.2
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 192 PARPCKYPWPANGAARTVAP-STASSLAPPIPVARP 88
P P K PWP A AP ST L PP P RP
Sbjct: 277 PGGPPK-PWPEGPMANAAAPTSTPQKLIPPQPTGRP 311
>BC139924-1|AAI39925.1| 584|Homo sapiens SMARCA4 protein protein.
Length = 584
Score = 31.9 bits (69), Expect = 3.2
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 192 PARPCKYPWPANGAARTVAP-STASSLAPPIPVARP 88
P P K PWP A AP ST L PP P RP
Sbjct: 277 PGGPPK-PWPEGPMANAAAPTSTPQKLIPPQPTGRP 311
>BC139917-1|AAI39918.1| 584|Homo sapiens SMARCA4 protein protein.
Length = 584
Score = 31.9 bits (69), Expect = 3.2
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 192 PARPCKYPWPANGAARTVAP-STASSLAPPIPVARP 88
P P K PWP A AP ST L PP P RP
Sbjct: 277 PGGPPK-PWPEGPMANAAAPTSTPQKLIPPQPTGRP 311
>AF254822-2|AAG24789.1| 1647|Homo sapiens SMARCA4 isoform 1 protein.
Length = 1647
Score = 31.9 bits (69), Expect = 3.2
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 192 PARPCKYPWPANGAARTVAP-STASSLAPPIPVARP 88
P P K PWP A AP ST L PP P RP
Sbjct: 277 PGGPPK-PWPEGPMANAAAPTSTPQKLIPPQPTGRP 311
>AF254822-1|AAG24790.1| 1679|Homo sapiens SMARCA4 isoform 2 protein.
Length = 1679
Score = 31.9 bits (69), Expect = 3.2
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 192 PARPCKYPWPANGAARTVAP-STASSLAPPIPVARP 88
P P K PWP A AP ST L PP P RP
Sbjct: 277 PGGPPK-PWPEGPMANAAAPTSTPQKLIPPQPTGRP 311
>AB209313-1|BAD92550.1| 1164|Homo sapiens SWI/SNF-related
matrix-associated actin-dependent regulator of chromatin
a4 var protein.
Length = 1164
Score = 31.9 bits (69), Expect = 3.2
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 192 PARPCKYPWPANGAARTVAP-STASSLAPPIPVARP 88
P P K PWP A AP ST L PP P RP
Sbjct: 234 PGGPPK-PWPEGPMANAAAPTSTPQKLIPPQPTGRP 268
>DQ100819-1|AAZ08826.1| 122|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 122
Score = 31.5 bits (68), Expect = 4.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 372 ALFADDTTVYYSSRNKSLIAKKLQSAALGQWFRKW 476
+L A+DT VYY +++ + + AA+G WF W
Sbjct: 85 SLRAEDTAVYYCAKDHPGLDIVVVPAAIGNWFDPW 119
>AK090401-1|BAC03382.1| 176|Homo sapiens FLJ00278 protein protein.
Length = 176
Score = 31.1 bits (67), Expect = 5.5
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 192 PARPCKYPWPANGAARTVAPSTASSL-APPIPVARP 88
P R C P P G A T PS+ASS +P P P
Sbjct: 125 PPRTCPRPQPGKGGAGTWPPSSASSAHSPQYPPTHP 160
>BC131591-1|AAI31592.1| 890|Homo sapiens PACS2 protein protein.
Length = 890
Score = 30.3 bits (65), Expect = 9.7
Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Frame = -2
Query: 301 PCGTPAVRGR----GEERVPSTRYRIERFDKKSRMMSPRLSGTPM*VPVACKRRRANGRP 134
PCG PA GR G R PS YR+ K ++ L + V +A K + +
Sbjct: 25 PCGAPASEGRPAGAGLRRNPSGAYRLCSLTLKKLVVFKELEKELISVVIAVKMQ--GSKR 82
Query: 133 IHRLVARTADPRGQAVTKFANTIFVVAYICFL 38
I R P GQ T A T F + Y FL
Sbjct: 83 ILRSHEIVLPPSGQVETDLALT-FSLQYPHFL 113
>AY393339-1|AAR32394.1| 157|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 157
Score = 30.3 bits (65), Expect = 9.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 372 ALFADDTTVYYSSRNKSLIAKKLQSAALGQWFRKW 476
+L +DDT VYY +R++ + L + G WF W
Sbjct: 81 SLRSDDTAVYYCARDRPI--PTLTTVITGNWFDPW 113
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,659,030
Number of Sequences: 237096
Number of extensions: 3268379
Number of successful extensions: 16991
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16977
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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