Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_J18
(984 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 42 9e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 42 9e-06
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 42 9e-06
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 42 9e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 42 9e-06
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 42 9e-06
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 42 9e-06
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 42 9e-06
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 41 1e-05
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 41 1e-05
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 41 2e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 41 2e-05
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 41 2e-05
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 40 3e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 39 6e-05
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 38 1e-04
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 38 1e-04
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 38 1e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 32 0.007
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 29 0.085
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 41.9 bits (94), Expect = 9e-06
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 249 LQMNWIDXRLSWNAGEWGCSTXL-VSSERLWRPDVVLLNXA 368
L++ W+D L WN E+G L ++ +LW+PD+++ N A
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 41.9 bits (94), Expect = 9e-06
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 249 LQMNWIDXRLSWNAGEWGCSTXL-VSSERLWRPDVVLLNXA 368
L++ W+D L WN E+G L ++ +LW+PD+++ N A
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 41.9 bits (94), Expect = 9e-06
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 249 LQMNWIDXRLSWNAGEWGCSTXL-VSSERLWRPDVVLLNXA 368
L++ W+D L WN E+G L ++ +LW+PD+++ N A
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 41.9 bits (94), Expect = 9e-06
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 249 LQMNWIDXRLSWNAGEWGCSTXL-VSSERLWRPDVVLLNXA 368
L++ W+D L WN E+G L ++ +LW+PD+++ N A
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 41.9 bits (94), Expect = 9e-06
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 249 LQMNWIDXRLSWNAGEWGCSTXL-VSSERLWRPDVVLLNXA 368
L++ W+D L WN E+G L ++ +LW+PD+++ N A
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 41.9 bits (94), Expect = 9e-06
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 249 LQMNWIDXRLSWNAGEWGCSTXL-VSSERLWRPDVVLLNXA 368
L++ W+D L WN E+G L ++ +LW+PD+++ N A
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 41.9 bits (94), Expect = 9e-06
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 249 LQMNWIDXRLSWNAGEWGCSTXL-VSSERLWRPDVVLLNXA 368
L++ W+D L WN E+G L ++ +LW+PD+++ N A
Sbjct: 107 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 147
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 41.9 bits (94), Expect = 9e-06
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 249 LQMNWIDXRLSWNAGEWGCSTXL-VSSERLWRPDVVLLNXA 368
L++ W+D L WN E+G L ++ +LW+PD+++ N A
Sbjct: 107 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 147
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 41.1 bits (92), Expect = 1e-05
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 249 LQMNWIDXRLSWNAGEWGCSTXL-VSSERLWRPDVVLLNXA 368
++ +W D +L W+ E+G L V S+ +WRPD+VL N A
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNA 117
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 41.1 bits (92), Expect = 1e-05
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +3
Query: 249 LQMNWIDXRLSWNAGEWG-CSTXLVSSERLWRPDVVLLNXAATXXGDYALPRPWYLITAL 425
++ W D +L WN ++G T V SE +W PD+VL N A G+Y + ++T
Sbjct: 73 VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA---DGNYEVT----IMTKA 125
Query: 426 VSXHKALXTLXPP 464
+ H PP
Sbjct: 126 ILHHTGKVVWKPP 138
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 40.7 bits (91), Expect = 2e-05
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +3
Query: 249 LQMNWIDXRLSWNAGEWGCSTXL-VSSERLWRPDVVLLNXAATXXGDYALPRPWYLITAL 425
++ +W D +L W E+G L V S+ +WRPD+VL N A G+Y + L+T
Sbjct: 81 VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVLYNNA---DGNYEVT----LMTKA 133
Query: 426 VSXHKALXTLXPP 464
+ L PP
Sbjct: 134 TVYYSGLVVWQPP 146
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 40.7 bits (91), Expect = 2e-05
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +3
Query: 249 LQMNWIDXRLSWNAGEWGCSTXL-VSSERLWRPDVVLLNXAATXXGDYALPRPWYLITAL 425
++ +W D +L W E+G L V S+ +WRPD+VL N A G++ + L T
Sbjct: 81 VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVLYNNA---DGNFEVT----LATKA 133
Query: 426 VSXHKALXTLXPP 464
H+ L PP
Sbjct: 134 TIYHQGLVEWKPP 146
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 40.7 bits (91), Expect = 2e-05
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +3
Query: 171 IVVNLTLHLRHA---NIRECESTVRILADLQMNWIDXRLSWNAGEWGCSTXL-VSSERLW 338
+VV L L L N+++ T + L+ W D + W+ E+G T L V SE +W
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 339 RPDVVLLNXA 368
PD+VL N A
Sbjct: 104 LPDIVLYNNA 113
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 40.3 bits (90), Expect = 3e-05
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 249 LQMNWIDXRLSWNAGEWGCSTXL-VSSERLWRPDVVLLNXA 368
++ W D +L WN E+G L V SE +W PD+VL N A
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 39.1 bits (87), Expect = 6e-05
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 261 WIDXRLSWNAGEW-GCSTXLVSSERLWRPDVVLLNXA 368
W D L WNA E+ G V R+WRPD +L N A
Sbjct: 62 WTDHHLKWNASEFAGIRVIRVPYNRVWRPDTILYNNA 98
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 38.3 bits (85), Expect = 1e-04
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +3
Query: 168 KIVVNLTL-HLRHANIRECESTVRILADLQMNWIDXRLSWNAGEWGCSTXL-VSSERLWR 341
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G L + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 342 PDVVLLNXA 368
PD+VL N A
Sbjct: 111 PDIVLFNNA 119
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 38.3 bits (85), Expect = 1e-04
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 249 LQMNWIDXRLSWNAGEWGCSTXL-VSSERLWRPDVVLLNXA 368
L++ W D + WN ++G L + RLW+PDV++ N A
Sbjct: 76 LKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSA 116
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 37.9 bits (84), Expect = 1e-04
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 177 VNLTLHLRHANIRECESTVRILADLQMNWIDXRLSWNAGEW-GCSTXLVSSERLWRPDVV 353
++ L ++H N+ E TV L++ W L+W + E+ ++ V S +W PD+V
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIV 121
Query: 354 L 356
+
Sbjct: 122 M 122
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 32.3 bits (70), Expect = 0.007
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 210 IRECESTVRILADLQMNWIDXRLSWNAGEWGCSTXLVSSERLWRPDVVLLN 362
I E + T + + +W+D RL++ G+ + + R+W+PD N
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 28.7 bits (61), Expect = 0.085
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 252 QMNWIDXRLSWNAGEWGCSTXLVSSERLWRPDVVLLN 362
+ +W D RLS+ S + ER+WRPD N
Sbjct: 90 RQSWRDSRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,986
Number of Sequences: 438
Number of extensions: 2464
Number of successful extensions: 37
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32532591
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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