Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_J12
(947 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC111802-1|AAI11803.1| 465|Homo sapiens CHRNG protein protein. 33 2.0
Y08416-1|CAA69693.1| 498|Homo sapiens nicotinic acetylcholine r... 31 8.1
U62439-1|AAB40117.1| 498|Homo sapiens nicotinic acetylcholine r... 31 8.1
U48861-1|AAA92123.1| 498|Homo sapiens beta 4 nicotinic acetylch... 31 8.1
BC096083-1|AAH96083.1| 198|Homo sapiens CHRNB4 protein protein. 31 8.1
BC096082-1|AAH96082.1| 498|Homo sapiens cholinergic receptor, n... 31 8.1
BC096081-1|AAH96081.1| 198|Homo sapiens CHRNB4 protein protein. 31 8.1
BC096080-1|AAH96080.1| 498|Homo sapiens cholinergic receptor, n... 31 8.1
AJ306454-1|CAC34819.1| 497|Homo sapiens neuronal nicotinic acet... 31 8.1
AF306329-1|AAL02062.1| 498|Homo sapiens neuronal nicotinic acet... 31 8.1
>BC111802-1|AAI11803.1| 465|Homo sapiens CHRNG protein protein.
Length = 465
Score = 32.7 bits (71), Expect = 2.0
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Frame = +2
Query: 74 LFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPP---DSKIV-VTLTLHLRHA-NVR 238
L LL A+ A+ N L+ D L+ YD + P DS +V V+L L L + ++
Sbjct: 9 LLLLLLAVCLGAQGRNQEE-RLLAD-LMQNYDPNLRPAERDSDVVNVSLKLTLTNLISLN 66
Query: 239 ESESTVRIQADLQMNWIDKRLSWN 310
E E + ++M W D RL W+
Sbjct: 67 EREEALTTNVWIEMQWCDYRLRWD 90
>Y08416-1|CAA69693.1| 498|Homo sapiens nicotinic acetylcholine
receptor beta4 subunit precursor protein.
Length = 498
Score = 30.7 bits (66), Expect = 8.1
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +2
Query: 74 LFLLTCAIASAAECENATSLSLMIDSLL--ATYDRDSPP--DSKIVVTLTLHLRHA---N 232
LF L A+ C A + ++D LL Y+ P S ++++ L L A +
Sbjct: 9 LFFLV-ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLIS 67
Query: 233 VRESESTVRIQADLQMNWIDKRLSWNA 313
V E E + L+ W D RL+WN+
Sbjct: 68 VNEREQIMTTNVWLKQEWTDYRLTWNS 94
>U62439-1|AAB40117.1| 498|Homo sapiens nicotinic acetylcholine
receptor beta4 subunit precursor protein.
Length = 498
Score = 30.7 bits (66), Expect = 8.1
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +2
Query: 74 LFLLTCAIASAAECENATSLSLMIDSLL--ATYDRDSPP--DSKIVVTLTLHLRHA---N 232
LF L A+ C A + ++D LL Y+ P S ++++ L L A +
Sbjct: 9 LFFLV-ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLIS 67
Query: 233 VRESESTVRIQADLQMNWIDKRLSWNA 313
V E E + L+ W D RL+WN+
Sbjct: 68 VNEREQIMTTNVWLKQEWTDYRLTWNS 94
>U48861-1|AAA92123.1| 498|Homo sapiens beta 4 nicotinic
acetylcholine receptor subunit protein.
Length = 498
Score = 30.7 bits (66), Expect = 8.1
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +2
Query: 74 LFLLTCAIASAAECENATSLSLMIDSLL--ATYDRDSPP--DSKIVVTLTLHLRHA---N 232
LF L A+ C A + ++D LL Y+ P S ++++ L L A +
Sbjct: 9 LFFLV-ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLIS 67
Query: 233 VRESESTVRIQADLQMNWIDKRLSWNA 313
V E E + L+ W D RL+WN+
Sbjct: 68 VNEREQIMTTNVWLKQEWTDYRLTWNS 94
>BC096083-1|AAH96083.1| 198|Homo sapiens CHRNB4 protein protein.
Length = 198
Score = 30.7 bits (66), Expect = 8.1
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +2
Query: 74 LFLLTCAIASAAECENATSLSLMIDSLL--ATYDRDSPP--DSKIVVTLTLHLRHA---N 232
LF L A+ C A + ++D LL Y+ P S ++++ L L A +
Sbjct: 9 LFFLV-ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLIS 67
Query: 233 VRESESTVRIQADLQMNWIDKRLSWNA 313
V E E + L+ W D RL+WN+
Sbjct: 68 VNEREQIMTTNVWLKQEWTDYRLTWNS 94
>BC096082-1|AAH96082.1| 498|Homo sapiens cholinergic receptor,
nicotinic, beta 4 protein.
Length = 498
Score = 30.7 bits (66), Expect = 8.1
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +2
Query: 74 LFLLTCAIASAAECENATSLSLMIDSLL--ATYDRDSPP--DSKIVVTLTLHLRHA---N 232
LF L A+ C A + ++D LL Y+ P S ++++ L L A +
Sbjct: 9 LFFLV-ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLIS 67
Query: 233 VRESESTVRIQADLQMNWIDKRLSWNA 313
V E E + L+ W D RL+WN+
Sbjct: 68 VNEREQIMTTNVWLKQEWTDYRLTWNS 94
>BC096081-1|AAH96081.1| 198|Homo sapiens CHRNB4 protein protein.
Length = 198
Score = 30.7 bits (66), Expect = 8.1
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +2
Query: 74 LFLLTCAIASAAECENATSLSLMIDSLL--ATYDRDSPP--DSKIVVTLTLHLRHA---N 232
LF L A+ C A + ++D LL Y+ P S ++++ L L A +
Sbjct: 9 LFFLV-ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLIS 67
Query: 233 VRESESTVRIQADLQMNWIDKRLSWNA 313
V E E + L+ W D RL+WN+
Sbjct: 68 VNEREQIMTTNVWLKQEWTDYRLTWNS 94
>BC096080-1|AAH96080.1| 498|Homo sapiens cholinergic receptor,
nicotinic, beta 4 protein.
Length = 498
Score = 30.7 bits (66), Expect = 8.1
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +2
Query: 74 LFLLTCAIASAAECENATSLSLMIDSLL--ATYDRDSPP--DSKIVVTLTLHLRHA---N 232
LF L A+ C A + ++D LL Y+ P S ++++ L L A +
Sbjct: 9 LFFLV-ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLIS 67
Query: 233 VRESESTVRIQADLQMNWIDKRLSWNA 313
V E E + L+ W D RL+WN+
Sbjct: 68 VNEREQIMTTNVWLKQEWTDYRLTWNS 94
>AJ306454-1|CAC34819.1| 497|Homo sapiens neuronal nicotinic
acetylcholine receptor beta-4 subunit protein.
Length = 497
Score = 30.7 bits (66), Expect = 8.1
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +2
Query: 74 LFLLTCAIASAAECENATSLSLMIDSLL--ATYDRDSPP--DSKIVVTLTLHLRHA---N 232
LF L A+ C A + ++D LL Y+ P S ++++ L L A +
Sbjct: 9 LFFLV-ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLIS 67
Query: 233 VRESESTVRIQADLQMNWIDKRLSWNA 313
V E E + L+ W D RL+WN+
Sbjct: 68 VNEREQIMTTNVWLKQEWTDYRLTWNS 94
>AF306329-1|AAL02062.1| 498|Homo sapiens neuronal nicotinic
acetylcholine receptor beta 4 subunit protein.
Length = 498
Score = 30.7 bits (66), Expect = 8.1
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +2
Query: 74 LFLLTCAIASAAECENATSLSLMIDSLL--ATYDRDSPP--DSKIVVTLTLHLRHA---N 232
LF L A+ C A + ++D LL Y+ P S ++++ L L A +
Sbjct: 9 LFFLV-ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLIS 67
Query: 233 VRESESTVRIQADLQMNWIDKRLSWNA 313
V E E + L+ W D RL+WN+
Sbjct: 68 VNEREQIMTTNVWLKQEWTDYRLTWNS 94
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,321,685
Number of Sequences: 237096
Number of extensions: 1500877
Number of successful extensions: 2815
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2815
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12492094950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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