Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_J12
(947 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 37 3e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 31 0.015
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 27 0.25
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 1.0
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 1.0
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 1.0
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 1.0
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 1.0
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 1.0
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 1.0
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 1.0
AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase pro... 24 2.3
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 23 5.3
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 22 7.1
D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein. 22 9.3
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 22 9.3
AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase pro... 22 9.3
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 36.7 bits (81), Expect = 3e-04
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = +2
Query: 59 ILFCYLFLLTCAIASAAECENATSLSLMIDS---LLATYDRDSPPDSKIVVTLT--LHLR 223
+LF + +L C++ TS S + L YDRD P+ K + L ++
Sbjct: 10 VLFVIINVLLHGQVICFVCKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQ 69
Query: 224 HANVRESESTVRIQADLQMNWIDKRLSWNA 313
H NV E TV L++ W L+W +
Sbjct: 70 HYNVDEYSHTVDFHVMLKLMWEQSHLTWKS 99
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 31.1 bits (67), Expect = 0.015
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRDSPPD---SKIVVTLTLHLRHAN-VRESESTVRIQADLQMNW 286
N +++S ++D+LL YD PD V + + +R + E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 287 IDKRLSW 307
+D+RL++
Sbjct: 62 VDRRLAF 68
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 27.1 bits (57), Expect = 0.25
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +2
Query: 140 MIDSLLATYDRDSPP------DSKIVVTLTLHLRH-ANVRESESTVRIQADLQMNWIDKR 298
++D++L YD P D +V + L +R A + + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 299 LSWN 310
L +N
Sbjct: 95 LRFN 98
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.0 bits (52), Expect = 1.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +2
Query: 230 NVRESESTVRIQADLQMNWIDKRLSWN 310
+V E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.0 bits (52), Expect = 1.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +2
Query: 230 NVRESESTVRIQADLQMNWIDKRLSWN 310
+V E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.0 bits (52), Expect = 1.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +2
Query: 230 NVRESESTVRIQADLQMNWIDKRLSWN 310
+V E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.0 bits (52), Expect = 1.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +2
Query: 230 NVRESESTVRIQADLQMNWIDKRLSWN 310
+V E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.0 bits (52), Expect = 1.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +2
Query: 230 NVRESESTVRIQADLQMNWIDKRLSWN 310
+V E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.0 bits (52), Expect = 1.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +2
Query: 230 NVRESESTVRIQADLQMNWIDKRLSWN 310
+V E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.0 bits (52), Expect = 1.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +2
Query: 230 NVRESESTVRIQADLQMNWIDKRLSWN 310
+V E + A L++ W+D L WN
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWN 119
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.0 bits (52), Expect = 1.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +2
Query: 230 NVRESESTVRIQADLQMNWIDKRLSWN 310
+V E + A L++ W+D L WN
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWN 119
>AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase
protein.
Length = 580
Score = 23.8 bits (49), Expect = 2.3
Identities = 12/47 (25%), Positives = 18/47 (38%)
Frame = -3
Query: 447 GAXIRYXGXESVVPGGGCSRXXQYHVEASTSVPRTPAKWXSPTXPAF 307
G R+ + V GC+ + S RTP +W + T F
Sbjct: 390 GMEDRWFTYQETVDPAGCNAGPAKYYLKSRDPERTPYQWDNSTSAGF 436
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 22.6 bits (46), Expect = 5.3
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -2
Query: 136 GQ*CCVFAFCRTSYSTSEEKQVTE 65
G+ CC F T Y + K VT+
Sbjct: 602 GEQCCWHCFNCTQYQIRDHKDVTQ 625
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 22.2 bits (45), Expect = 7.1
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Frame = +2
Query: 65 FCYLFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDS--KIVVTLTLHL--RHAN 232
F + +LL C ++ T+L + L YD + P S +I +T+ L +
Sbjct: 27 FGFSYLLNCK-----NYDHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLME 81
Query: 233 VRESESTVRIQADLQMNWIDKRLSW 307
+ S + + + + + W D LSW
Sbjct: 82 FDDWTSVMELHSWMTLMWTDSHLSW 106
>D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein.
Length = 567
Score = 21.8 bits (44), Expect = 9.3
Identities = 11/45 (24%), Positives = 14/45 (31%)
Frame = -3
Query: 432 YXGXESVVPGGGCSRXXQYHVEASTSVPRTPAKWXSPTXPAFQLS 298
Y E GC + + S RTP +W F S
Sbjct: 389 YISWEDTQDPQGCGAGKENYQTMSRDPARTPFQWDDSVSAGFSSS 433
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 21.8 bits (44), Expect = 9.3
Identities = 8/27 (29%), Positives = 13/27 (48%)
Frame = +2
Query: 230 NVRESESTVRIQADLQMNWIDKRLSWN 310
NV E ++ L+ W D +L W+
Sbjct: 65 NVNEKNQIMKSNVWLRFIWTDYQLQWD 91
>AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase
protein.
Length = 567
Score = 21.8 bits (44), Expect = 9.3
Identities = 11/45 (24%), Positives = 14/45 (31%)
Frame = -3
Query: 432 YXGXESVVPGGGCSRXXQYHVEASTSVPRTPAKWXSPTXPAFQLS 298
Y E GC + + S RTP +W F S
Sbjct: 389 YISWEDTQDPQGCGAGKENYQTMSRDPARTPFQWDDSVSAGFSSS 433
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,562
Number of Sequences: 438
Number of extensions: 2737
Number of successful extensions: 18
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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