Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_J02
(842 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 1.1
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.5
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.3
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 27 3.3
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.4
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 7.7
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 26 7.7
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 26 7.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 7.7
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 7.7
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 1.1
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +3
Query: 432 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 602
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 603 DVTVEGVNVLATPSSS 650
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 679 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 560
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 414 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 527
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 682 IKPPSPAISATSTRSSNPEFIHQPPPDLTS 771
++PPSP+ S+ S PEF +P + T+
Sbjct: 461 VEPPSPSKEIKSSHFSVPEFKFEPKTEATT 490
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.4
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 495 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 584
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 664 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 530
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 255 GVWKKRKH*PRREWPKRQKRXKAQF 181
G WKK + + EW K ++ KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 617 RSQCAGHPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPNS 742
+SQ H I ++ Y + + S +P S L+ H++P+S
Sbjct: 124 QSQNTNHTSISANPYVNNPSHTSRNPDSGSSLNTASHEVPSS 165
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 7.7
Identities = 17/70 (24%), Positives = 26/70 (37%)
Frame = +3
Query: 432 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 611
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 612 VEGVNVLATP 641
V +TP
Sbjct: 540 YTSTPVTSTP 549
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +2
Query: 704 SRLHQPDHQIPNSYTNHPQT 763
SRLHQ IPNS N QT
Sbjct: 239 SRLHQSPSPIPNSNDNDSQT 258
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,302,540
Number of Sequences: 5004
Number of extensions: 65766
Number of successful extensions: 233
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -