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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_I19
         (899 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    47   2e-07
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    46   6e-07
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    45   1e-06
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    44   3e-06
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    44   3e-06
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    44   3e-06
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    44   3e-06
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    44   3e-06
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    44   3e-06
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    44   3e-06
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    42   6e-06
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    42   6e-06
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    40   2e-05
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    40   2e-05
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    40   3e-05
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    40   3e-05
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    40   4e-05
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    39   7e-05
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    38   1e-04
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    38   1e-04
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    36   7e-04
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   6.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.6  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 47.2 bits (107), Expect = 2e-07
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
 Frame = +3

Query: 102 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 266
           C++ TS S +      L   YDRD  P+ K    ++  L ++H N+ E   TV     L+
Sbjct: 28  CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87

Query: 267 MNWIDKRLSWNAGDW-GCSTWLVSSXRLWRPDVVL 368
           + W    L+W + ++   ++  V S  +W PD+V+
Sbjct: 88  LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 45.6 bits (103), Expect = 6e-07
 Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
 Frame = +3

Query: 84  IASAAECENATSLSLMIDSLLATYDRDSPPDSK----IVVNLTLHLRHA---NIRESEST 242
           I SA  C        + D LL+ Y+R   P S     +VV L L L      N+++   T
Sbjct: 9   ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68

Query: 243 VRIQADLQMNWIDKRLSWNAGDWGCSTWL-VSSXRLWRPDVVLVNAGCNHXTGTXLSAPV 419
             +   L+  W D +  W+  ++G  T L V S  +W PD+VL N        T ++  +
Sbjct: 69  TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAI 126

Query: 420 YLIXGSV 440
               G V
Sbjct: 127 LHYTGKV 133


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 44.8 bits (101), Expect = 1e-06
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 8/131 (6%)
 Frame = +3

Query: 72  LTCAIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRH---ANIRE 230
           ++C +A        +    + D LL+ Y+R   P      ++ V + L L      N++ 
Sbjct: 5   ISCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKN 64

Query: 231 SESTVRIQADLQMNWIDKRLSWNAGDWG-CSTWLVSSXRLWRPDVVLVNAGCNHXTGTXL 407
              T  +   ++  W D +L WN  D+G   T  V S  +W PD+VL N    +   T +
Sbjct: 65  QIMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIM 122

Query: 408 SAPVYLIXGSV 440
           +  +    G V
Sbjct: 123 TKAILHHTGKV 133


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 43.6 bits (98), Expect = 3e-06
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +3

Query: 219 NIRESESTVRIQADLQMNWIDKRLSWNAGDW-GCSTWLVSSXRLWRPDVVLVNAGCNHXT 395
           ++ E    +   A L++ W+D  L WN  ++ G     ++  +LW+PD+++ N+      
Sbjct: 25  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84

Query: 396 GTXLSAPVYLIXGS 437
           GT  ++ V    GS
Sbjct: 85  GTYQTSVVVTHDGS 98


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 43.6 bits (98), Expect = 3e-06
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +3

Query: 219 NIRESESTVRIQADLQMNWIDKRLSWNAGDW-GCSTWLVSSXRLWRPDVVLVNAGCNHXT 395
           ++ E    +   A L++ W+D  L WN  ++ G     ++  +LW+PD+++ N+      
Sbjct: 25  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84

Query: 396 GTXLSAPVYLIXGS 437
           GT  ++ V    GS
Sbjct: 85  GTYQTSVVVTHDGS 98


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 43.6 bits (98), Expect = 3e-06
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +3

Query: 219 NIRESESTVRIQADLQMNWIDKRLSWNAGDW-GCSTWLVSSXRLWRPDVVLVNAGCNHXT 395
           ++ E    +   A L++ W+D  L WN  ++ G     ++  +LW+PD+++ N+      
Sbjct: 25  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84

Query: 396 GTXLSAPVYLIXGS 437
           GT  ++ V    GS
Sbjct: 85  GTYQTSVVVTHDGS 98


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 43.6 bits (98), Expect = 3e-06
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +3

Query: 219 NIRESESTVRIQADLQMNWIDKRLSWNAGDW-GCSTWLVSSXRLWRPDVVLVNAGCNHXT 395
           ++ E    +   A L++ W+D  L WN  ++ G     ++  +LW+PD+++ N+      
Sbjct: 25  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84

Query: 396 GTXLSAPVYLIXGS 437
           GT  ++ V    GS
Sbjct: 85  GTYQTSVVVTHDGS 98


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 43.6 bits (98), Expect = 3e-06
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +3

Query: 219 NIRESESTVRIQADLQMNWIDKRLSWNAGDW-GCSTWLVSSXRLWRPDVVLVNAGCNHXT 395
           ++ E    +   A L++ W+D  L WN  ++ G     ++  +LW+PD+++ N+      
Sbjct: 25  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84

Query: 396 GTXLSAPVYLIXGS 437
           GT  ++ V    GS
Sbjct: 85  GTYQTSVVVTHDGS 98


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 43.6 bits (98), Expect = 3e-06
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +3

Query: 219 NIRESESTVRIQADLQMNWIDKRLSWNAGDW-GCSTWLVSSXRLWRPDVVLVNAGCNHXT 395
           ++ E    +   A L++ W+D  L WN  ++ G     ++  +LW+PD+++ N+      
Sbjct: 25  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84

Query: 396 GTXLSAPVYLIXGS 437
           GT  ++ V    GS
Sbjct: 85  GTYQTSVVVTHNGS 98


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 43.6 bits (98), Expect = 3e-06
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
 Frame = +3

Query: 108 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 275
           N +++S ++D+LL  YD    PD       V + + +R    I E + T  +    + +W
Sbjct: 2   NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61

Query: 276 IDKRLSWNAGDWGCSTWLVSSXRLWRPDVVLVN 374
           +D+RL++  G    +  +    R+W+PD    N
Sbjct: 62  VDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 42.3 bits (95), Expect = 6e-06
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +3

Query: 219 NIRESESTVRIQADLQMNWIDKRLSWNAGDW-GCSTWLVSSXRLWRPDVVLVNAGCNHXT 395
           ++ E    +   A L++ W+D  L WN  ++ G     ++  +LW+PD+++ N+      
Sbjct: 93  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152

Query: 396 GTXLSAPVYLIXGS 437
           GT  +  V    GS
Sbjct: 153 GTYQTNVVVTHNGS 166


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 42.3 bits (95), Expect = 6e-06
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +3

Query: 219 NIRESESTVRIQADLQMNWIDKRLSWNAGDW-GCSTWLVSSXRLWRPDVVLVNAGCNHXT 395
           ++ E    +   A L++ W+D  L WN  ++ G     ++  +LW+PD+++ N+      
Sbjct: 93  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152

Query: 396 GTXLSAPVYLIXGS 437
           GT  +  V    GS
Sbjct: 153 GTYQTNVVVTHNGS 166


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
 Frame = +3

Query: 102 CENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQAD 260
           C        + D LL+ Y++   P   +   LT+ ++         N++    T  +   
Sbjct: 19  CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76

Query: 261 LQMNWIDKRLSWNAGDWGCSTWL-VSSXRLWRPDVVLVN 374
           ++ +W D +L W+  ++G    L V S  +WRPD+VL N
Sbjct: 77  VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYN 115


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
 Frame = +3

Query: 81  AIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTV 245
           A+A++      +    +++ LL TY+    P       +V++  L L    ++ E    +
Sbjct: 11  ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70

Query: 246 RIQADLQMNWIDKRLSWNAGDWGCSTWL-VSSXRLWRPDVVLVNAGCNHXTGT 401
                L++ W D  + WN  D+G    L +   RLW+PDV++ N+      GT
Sbjct: 71  ITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGT 123


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 39.9 bits (89), Expect = 3e-05
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)
 Frame = +3

Query: 54  FWLPFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDS--KIVVNLTLHL--RHAN 221
           F   +LL C        ++ T+L  +   L   YD +  P S  +I  N+T+ L  +   
Sbjct: 27  FGFSYLLNCK-----NYDHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLME 81

Query: 222 IRESESTVRIQADLQMNWIDKRLSWNAGDW-GCSTWLVSSXRLWRPDVVLVNAGCNHXTG 398
             +  S + + + + + W D  LSW   D+ G +   V S  +W PD+ + N+G      
Sbjct: 82  FDDWTSVMELHSWMTLMWTDSHLSWKPSDFDGINYIYVKSDDIWVPDISVYNSGDMTFDQ 141

Query: 399 TXLSAPVYLIXGSVS 443
           T +     L+  S S
Sbjct: 142 TGIPPTTCLVFSSGS 156


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 39.9 bits (89), Expect = 3e-05
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 8/113 (7%)
 Frame = +3

Query: 129 MIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQADLQMNWIDKR 287
           + D LL+ Y+R   P       LT+ L          N++    T  +   ++  W D +
Sbjct: 37  LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVW--VEQRWNDYK 94

Query: 288 LSWNAGDWGCSTWL-VSSXRLWRPDVVLVNAGCNHXTGTXLSAPVYLIXGSVS 443
           L WN  ++G    L V S  +W PD+VL N    +   T ++       G VS
Sbjct: 95  LKWNPEEYGGVEMLYVPSENIWLPDIVLYNNADGNYEVTLMTKATLKYTGDVS 147


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 39.5 bits (88), Expect = 4e-05
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
 Frame = +3

Query: 129 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVRIQAD---LQMNWIDKRLS 293
           + D LL+ Y++   P  ++  V+ + + L+ + + +     +I      ++ +W D +L 
Sbjct: 32  LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91

Query: 294 WNAGDWGCSTWL-VSSXRLWRPDVVLV-NAGCNHXTGTXLSAPVY 422
           W   ++G    L V S  +WRPD+VL  NA  N+       A VY
Sbjct: 92  WEPKEYGGVKMLHVPSDHIWRPDIVLYNNADGNYEVTLMTKATVY 136


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 38.7 bits (86), Expect = 7e-05
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +3

Query: 180 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGDW-GCSTWLVSSXRLWR 353
           K+ VN  L  ++  N+ E    ++    L+  W D +L W+  D+ G     +   ++W+
Sbjct: 51  KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110

Query: 354 PDVVLVN 374
           PD+VL N
Sbjct: 111 PDIVLFN 117


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 37.9 bits (84), Expect = 1e-04
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
 Frame = +3

Query: 129 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVRIQAD---LQMNWIDKRLS 293
           + D LL+ Y++   P  ++  V+ + + L+ + + +     +I      ++ +W D +L 
Sbjct: 32  LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91

Query: 294 WNAGDWGCSTWL-VSSXRLWRPDVVLV-NAGCNHXTGTXLSAPVY 422
           W   ++G    L V S  +WRPD+VL  NA  N        A +Y
Sbjct: 92  WEPKEYGGVKMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATIY 136


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 37.9 bits (84), Expect = 1e-04
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 183 IVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGDW-GCSTWLVSSXRLWRPD 359
           +V  L+LH    ++ E    +     +   W D  L WNA ++ G     V   R+WRPD
Sbjct: 33  VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91

Query: 360 VVLVN 374
            +L N
Sbjct: 92  TILYN 96


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 35.5 bits (78), Expect = 7e-04
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 10/124 (8%)
 Frame = +3

Query: 48  ILFWLPFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPP------DSKIVVNLTLHL 209
           +L  L FLL  +  +  +         ++D++L  YD    P      D   +V + L +
Sbjct: 8   LLVLLTFLLHPSRCTQGKVNYREKEKEVLDNILGGYDARIRPSGENATDGPAIVRVNLFV 67

Query: 210 RH-ANIRESESTVRIQADLQMNWIDKRLSWNAGDWGCS---TWLVSSXRLWRPDVVLVNA 377
           R  A I + +    +Q   +  W+D+RL +N  D+G       L  + R+W PD+   N 
Sbjct: 68  RSIATISDIKMEYSVQLTFREQWLDERLRFN--DFGGRLKYLTLTDASRVWMPDLFFSNE 125

Query: 378 GCNH 389
              H
Sbjct: 126 KEGH 129


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 348 TSXXRTPAKCCSPSPLRSNSVVCRSNSFED 259
           T    TP +  +  PL +  V CR+N  E+
Sbjct: 21  TMPETTPRRKKNKKPLPTECVFCRNNGEEE 50


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 326 PSAAAPVPCVPTQS 285
           PSA AP+P +P  S
Sbjct: 411 PSAGAPMPPIPNMS 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,878
Number of Sequences: 438
Number of extensions: 3188
Number of successful extensions: 55
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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