Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_I06
(924 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 48 9e-08
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 47 3e-07
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 42 6e-06
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 40 2e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 40 3e-05
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 40 4e-05
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 40 4e-05
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 40 4e-05
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 40 4e-05
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 40 4e-05
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 40 4e-05
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 40 4e-05
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 40 4e-05
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 40 4e-05
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 37 2e-04
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 37 2e-04
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 37 2e-04
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 36 5e-04
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 36 5e-04
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 34 0.002
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 33 0.005
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 31 0.015
DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein. 22 6.8
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 22 9.0
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 22 9.0
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 22 9.0
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 22 9.0
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 48.4 bits (110), Expect = 9e-08
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Frame = +2
Query: 80 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 244
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 245 MNWIDKRLSWNAGEWGCXTWV-VSSERLWRPDVVL 346
+ W L+W + E+ + V S +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 46.8 bits (106), Expect = 3e-07
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Frame = +2
Query: 62 IASAAECENATSLSLMIDSLLATYDRDSPPDSK----IVVNLTLHLRHA---NIRESEST 220
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 221 VRIQADLQMNWIDKRLSWNAGEWGCXTWV-VSSERLWRPDVVLLXAAATTGGV 376
+ L+ W D + W+ E+G T + V SE +W PD+VL A GV
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGV 119
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 42.3 bits (95), Expect = 6e-06
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Frame = +2
Query: 86 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 253
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 254 IDKRLSWNAGEWGCXTWVVSSERLWRPD 337
+D+RL++ G+ + R+W+PD
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPD 89
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 40.3 bits (90), Expect = 2e-05
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Frame = +2
Query: 107 MIDSLLATYDRDSPP----DSKIVVNLTLHLRH---ANIRESESTVRIQADLQMNWIDKR 265
+ D LL+ Y+R P ++ V + L L N++ T + ++ W D +
Sbjct: 24 LYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYK 81
Query: 266 LSWNAGEWG-CXTWVVSSERLWRPDVVL 346
L WN ++G T V SE +W PD+VL
Sbjct: 82 LKWNPDDYGGVDTLHVPSEHIWLPDIVL 109
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 39.9 bits (89), Expect = 3e-05
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Frame = +2
Query: 80 CENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQAD 238
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 239 LQMNWIDKRLSWNAGEWGCXTWV-VSSERLWRPDVVL 346
++ +W D +L W+ E+G + V S+ +WRPD+VL
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVL 113
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 39.5 bits (88), Expect = 4e-05
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 197 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCXTWVVSSERLWRPDVVLLXAA 358
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ +A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 39.5 bits (88), Expect = 4e-05
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 197 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCXTWVVSSERLWRPDVVLLXAA 358
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ +A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 39.5 bits (88), Expect = 4e-05
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 197 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCXTWVVSSERLWRPDVVLLXAA 358
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ +A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 39.5 bits (88), Expect = 4e-05
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 197 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCXTWVVSSERLWRPDVVLLXAA 358
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ +A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 39.5 bits (88), Expect = 4e-05
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 197 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCXTWVVSSERLWRPDVVLLXAA 358
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ +A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 39.5 bits (88), Expect = 4e-05
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 197 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCXTWVVSSERLWRPDVVLLXAA 358
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ +A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 39.5 bits (88), Expect = 4e-05
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 197 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCXTWVVSSERLWRPDVVLLXAA 358
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ +A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 147
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 39.5 bits (88), Expect = 4e-05
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 197 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCXTWVVSSERLWRPDVVLLXAA 358
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ +A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 147
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 39.5 bits (88), Expect = 4e-05
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 11/115 (9%)
Frame = +2
Query: 35 GYRFSSLDAIASAAEC---ENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLR----- 190
G F++L I S A E + D LL+ Y+R P LT+ L
Sbjct: 10 GVLFNTLHIIYSVAGLKIFEANPDTKRLYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQ 69
Query: 191 --HANIRESESTVRIQADLQMNWIDKRLSWNAGEWGCXTWV-VSSERLWRPDVVL 346
N++ T + ++ W D +L WN E+G + V SE +W PD+VL
Sbjct: 70 LIEMNLKNQVMTTNVW--VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVL 122
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 37.1 bits (82), Expect = 2e-04
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Frame = +2
Query: 107 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVRIQAD---LQMNWIDKRLS 271
+ D LL+ Y++ P ++ V+ + + L+ + + + +I ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 272 WNAGEWGCXTWV-VSSERLWRPDVVL 346
W E+G + V S+ +WRPD+VL
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVL 117
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 37.1 bits (82), Expect = 2e-04
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Frame = +2
Query: 107 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVRIQAD---LQMNWIDKRLS 271
+ D LL+ Y++ P ++ V+ + + L+ + + + +I ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 272 WNAGEWGCXTWV-VSSERLWRPDVVL 346
W E+G + V S+ +WRPD+VL
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVL 117
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 161 IVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCXTWVVSSERLWRPD 337
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 338 VVL 346
+L
Sbjct: 92 TIL 94
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 35.9 bits (79), Expect = 5e-04
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +2
Query: 158 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCXTWVVSSERLWR 331
K+ VN L ++ N+ E ++ L+ W D +L W+ ++ G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 332 PDVVLLXAA 358
PD+VL A
Sbjct: 111 PDIVLFNNA 119
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 35.9 bits (79), Expect = 5e-04
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Frame = +2
Query: 41 RFSSLDAIASAAE--CENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-N 199
R++ + AIA AA + +++ LL TY+ P +V++ L L +
Sbjct: 3 RWTLMAAIALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIID 62
Query: 200 IRESESTVRIQADLQMNWIDKRLSWNAGEW-GCXTWVVSSERLWRPDVVLLXAA 358
+ E + L++ W D + WN ++ G + RLW+PDV++ +A
Sbjct: 63 VDEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSA 116
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 34.3 bits (75), Expect = 0.002
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Frame = +2
Query: 83 ENATSLSLMIDSLLATYDRDSPPDS--KIVVNLTLHL--RHANIRESESTVRIQADLQMN 250
++ T+L + L YD + P S +I N+T+ L + + S + + + + +
Sbjct: 39 DHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEFDDWTSVMELHSWMTLM 98
Query: 251 WIDKRLSWNAGEWGCXTWV-VSSERLWRPDV 340
W D LSW ++ ++ V S+ +W PD+
Sbjct: 99 WTDSHLSWKPSDFDGINYIYVKSDDIWVPDI 129
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 32.7 bits (71), Expect = 0.005
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Frame = +2
Query: 107 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 265
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 266 LSWN--AGEWGCXTWVVSSERLWRPDV 340
L +N G T + + R+W PD+
Sbjct: 95 LRFNDFGGRLKYLT-LTDASRVWMPDL 120
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 31.1 bits (67), Expect = 0.015
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +2
Query: 95 SLSLMIDSLLATYDRDSPPD----SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNWID 259
++++++++LL Y+ + P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 260 KRLSWNAGEWGCXTWVVSSERLWRPD 337
RLS+ + ER+WRPD
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPD 121
>DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein.
Length = 120
Score = 22.2 bits (45), Expect = 6.8
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 341 PRQASTSVPRTPPKXC-SPTPLRSNSVVCRSNSFED 237
P + ++P T P+ + PL + V CR+N E+
Sbjct: 15 PDLDNVTMPETTPRRKKNKKPLPTECVFCRNNGEEE 50
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.8 bits (44), Expect = 9.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -2
Query: 56 QVRRNGNQNNISRRHFI 6
++ RNG N + RRH I
Sbjct: 167 RIYRNGTVNYLMRRHLI 183
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.8 bits (44), Expect = 9.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -2
Query: 56 QVRRNGNQNNISRRHFI 6
++ RNG N + RRH I
Sbjct: 167 RIYRNGTVNYLMRRHLI 183
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.8 bits (44), Expect = 9.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -2
Query: 56 QVRRNGNQNNISRRHFI 6
++ RNG N + RRH I
Sbjct: 218 RIYRNGTVNYLMRRHLI 234
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.8 bits (44), Expect = 9.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -2
Query: 56 QVRRNGNQNNISRRHFI 6
++ RNG N + RRH I
Sbjct: 167 RIYRNGTVNYLMRRHLI 183
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,701
Number of Sequences: 438
Number of extensions: 5055
Number of successful extensions: 56
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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