Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_I05
         (893 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   5.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   5.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   5.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   6.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   8.7  

>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 851 GXNCNPNPQHEGVQRV 804
           G +C PN  + GVQR+
Sbjct: 70  GASCGPNVYNRGVQRL 85


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = -2

Query: 151 VAIRMPPVIPINH-----YLGVLKTN 89
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = -2

Query: 151 VAIRMPPVIPINH-----YLGVLKTN 89
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = -2

Query: 151 VAIRMPPVIPINH-----YLGVLKTN 89
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 163 NSWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 285
           N  +VAR   A  F   V IN+     +  R+   L+ T+N
Sbjct: 351 NQAVVARHDEAMIFPADVKINRGLXWIISDRMPVFLLXTLN 391


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 174  RRKTNISESICQRCFHQ 224
            RR+ N++E++C   F Q
Sbjct: 966  RRRLNVNETVCSDYFSQ 982


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
 Frame = -1

Query: 563 RQIAPPTKNGHAPPPT-ESRKSC*SVNPSGVRAW*DFPCWVKLSRRLHSWWCPSVNSFK 390
           RQ+    + GH  PP  + R S  S   SG        C+    R+ H   CP +   +
Sbjct: 265 RQLNSDVQPGHGSPPVKQHRSSSASTTCSGHTV----RCFTGGPRKSHESQCPMLQKLE 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,076
Number of Sequences: 438
Number of extensions: 5508
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)