Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_H18
(952 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 46 5e-07
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 46 5e-07
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 46 7e-07
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 44 3e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 44 3e-06
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 44 3e-06
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 44 3e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 44 3e-06
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 42 8e-06
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 39 6e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 39 6e-05
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 39 6e-05
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 39 8e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 39 8e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 38 1e-04
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 38 2e-04
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 37 2e-04
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 37 3e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 32 0.009
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 27 0.25
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 46.0 bits (104), Expect = 5e-07
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +3
Query: 171 NIRESESTVRILADLQMSWIDKRLSWNAGEWGCXTXL-VSSERLWRPDVVLLXAAATS-A 344
++ E + A L++ W+D L WN E+G L ++ +LW+PD+++ +A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 345 GDYALRARVSNNGS 386
G Y V++NGS
Sbjct: 153 GTYQTNVVVTHNGS 166
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 46.0 bits (104), Expect = 5e-07
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +3
Query: 171 NIRESESTVRILADLQMSWIDKRLSWNAGEWGCXTXL-VSSERLWRPDVVLLXAAATS-A 344
++ E + A L++ W+D L WN E+G L ++ +LW+PD+++ +A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 345 GDYALRARVSNNGS 386
G Y V++NGS
Sbjct: 153 GTYQTNVVVTHNGS 166
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 45.6 bits (103), Expect = 7e-07
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +3
Query: 171 NIRESESTVRILADLQMSWIDKRLSWNAGEWGCXTXL-VSSERLWRPDVVLLXAAATS-A 344
++ E + A L++ W+D L WN E+G L ++ +LW+PD+++ +A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 345 GDYALRARVSNNGS 386
G Y V++NGS
Sbjct: 85 GTYQTSVVVTHNGS 98
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 43.6 bits (98), Expect = 3e-06
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +3
Query: 171 NIRESESTVRILADLQMSWIDKRLSWNAGEWGCXTXL-VSSERLWRPDVVLLXAAATS-A 344
++ E + A L++ W+D L WN E+G L ++ +LW+PD+++ +A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 345 GDYALRARVSNNGS 386
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 43.6 bits (98), Expect = 3e-06
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +3
Query: 171 NIRESESTVRILADLQMSWIDKRLSWNAGEWGCXTXL-VSSERLWRPDVVLLXAAATS-A 344
++ E + A L++ W+D L WN E+G L ++ +LW+PD+++ +A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 345 GDYALRARVSNNGS 386
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 43.6 bits (98), Expect = 3e-06
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +3
Query: 171 NIRESESTVRILADLQMSWIDKRLSWNAGEWGCXTXL-VSSERLWRPDVVLLXAAATS-A 344
++ E + A L++ W+D L WN E+G L ++ +LW+PD+++ +A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 345 GDYALRARVSNNGS 386
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 43.6 bits (98), Expect = 3e-06
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +3
Query: 171 NIRESESTVRILADLQMSWIDKRLSWNAGEWGCXTXL-VSSERLWRPDVVLLXAAATS-A 344
++ E + A L++ W+D L WN E+G L ++ +LW+PD+++ +A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 345 GDYALRARVSNNGS 386
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 43.6 bits (98), Expect = 3e-06
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +3
Query: 171 NIRESESTVRILADLQMSWIDKRLSWNAGEWGCXTXL-VSSERLWRPDVVLLXAAATS-A 344
++ E + A L++ W+D L WN E+G L ++ +LW+PD+++ +A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 345 GDYALRARVSNNGS 386
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 41.9 bits (94), Expect = 8e-06
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 213 LQMSWIDKRLSWNAGEWGCXTXL-VSSERLWRPDVVLLXAAATS-AGDYALRARVSNNGS 386
L++ W D + WN ++G L + RLW+PDV++ +A G Y V NNG+
Sbjct: 76 LKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGT 135
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 39.1 bits (87), Expect = 6e-05
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 141 VNLTLHLRHANIRESESTVRILADLQMSWIDKRLSWNAGEWGCXTXL-VSSERLWRPDVV 317
++ L ++H N+ E TV L++ W L+W + E+ + V S +W PD+V
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIV 121
Query: 318 LLXAAATSAG 347
+ + TS G
Sbjct: 122 M--HSVTSVG 129
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 39.1 bits (87), Expect = 6e-05
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 213 LQMSWIDKRLSWNAGEWGCXTXL-VSSERLWRPDVVL 320
++ SW D +L W+ E+G L V S+ +WRPD+VL
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVL 113
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 39.1 bits (87), Expect = 6e-05
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +3
Query: 135 IVVNLTLHLRHA---NIRESESTVRILADLQMSWIDKRLSWNAGEWGCXTXL-VSSERLW 302
+VV L L L N+++ T + L+ W D + W+ E+G T L V SE +W
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 303 RPDVVL 320
PD+VL
Sbjct: 104 LPDIVL 109
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 38.7 bits (86), Expect = 8e-05
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 132 KIVVNLTL-HLRHANIRESESTVRILADLQMSWIDKRLSWNAGEWGCXTXL-VSSERLWR 305
++ + L L L N++ T + ++ SW D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 306 PDVVL 320
PD+VL
Sbjct: 113 PDIVL 117
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 38.7 bits (86), Expect = 8e-05
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 132 KIVVNLTL-HLRHANIRESESTVRILADLQMSWIDKRLSWNAGEWGCXTXL-VSSERLWR 305
++ + L L L N++ T + ++ SW D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 306 PDVVL 320
PD+VL
Sbjct: 113 PDIVL 117
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Frame = +3
Query: 135 IVVNLTLHLRHANIRESESTVRILADLQMSWIDKRLSWNAGEW-GCXTXLVSSERLWRPD 311
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 312 VVLLXAAATSAGDYALRAR--VSNNGSV 389
+L A + VS+ G V
Sbjct: 92 TILYNNADPQYSSAVINTNVIVSHTGEV 119
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 37.5 bits (83), Expect = 2e-04
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +3
Query: 132 KIVVNLTL-HLRHANIRESESTVRILADLQMSWIDKRLSWNAGEWGCXTXL-VSSERLWR 305
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G L + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 306 PDVVLLXAAATSAGDYALR 362
PD+VL A G+Y +R
Sbjct: 111 PDIVLFNNA---DGNYEVR 126
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 37.1 bits (82), Expect = 2e-04
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +3
Query: 102 RTIGSLPPYSKIVVNLTL-HLRHANIRESESTVRILADLQMSWIDKRLSWNAGEWG-CXT 275
R +G+ + + L L L N++ T + ++ W D +L WN ++G T
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWNPDDYGGVDT 94
Query: 276 XLVSSERLWRPDVVL 320
V SE +W PD+VL
Sbjct: 95 LHVPSEHIWLPDIVL 109
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 36.7 bits (81), Expect = 3e-04
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 213 LQMSWIDKRLSWNAGEWGCXTXL-VSSERLWRPDVVL 320
++ W D +L WN E+G L V SE +W PD+VL
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVL 122
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 31.9 bits (69), Expect = 0.009
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 174 IRESESTVRILADLQMSWIDKRLSWNAGEWGCXTXLVSSERLWRPD 311
I E + T + + SW+D+RL++ G+ + R+W+PD
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPD 89
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 27.1 bits (57), Expect = 0.25
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Frame = +3
Query: 216 QMSWIDKRLSWNAGEWGCXTXLVSSERLWRPDVVLLXAAATSAGDYAL---RARVSNNGS 386
+ SW D RLS+ + ER+WRPD + + R+S +G
Sbjct: 90 RQSWRDSRLSFLGPIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGD 149
Query: 387 VSXIKRLDIXTPXSM 431
+ RL I M
Sbjct: 150 ILYSMRLTIKAKCPM 164
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,340
Number of Sequences: 438
Number of extensions: 2803
Number of successful extensions: 41
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31202262
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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