Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_H08
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    29   0.64 
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.5  
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    26   6.0  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    26   6.0  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    26   7.9  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    26   7.9  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = +2

Query: 143 DIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQ 322
           DI   FD + H+ LI  L +     R + +IR  L N  +      T +R +    G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKAL-NAGYL-----TENRYKYDIVGTPQ 423

Query: 323 GSALSPXI 346
           GS +SP +
Sbjct: 424 GSIVSPIL 431


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 675 LGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSR 782
           LG++    M +  H   + D+   +LGR+ P+LCSR
Sbjct: 177 LGISSKYAMLYTSHSFNLVDK---LLGRINPLLCSR 209


>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
 Frame = -3

Query: 400 SARWVSGDRGISLIYKLNNXRGERGALRDSGGQLTGTRTSSL-------YSISKRTVRQE 242
           SA  + G +GI   Y     R     L   GGQ  G R+ +L       +  + R  ++E
Sbjct: 297 SAHKIYGPKGIGAAYVRRRPRVRLEPLISGGGQERGLRSGTLAPSQVVGFGTAARICKEE 356

Query: 241 VSYD 230
           + YD
Sbjct: 357 MKYD 360


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 479  HPGTVVPEVANRHQPHEKRS 538
            HP  VV +VAN + PH K S
Sbjct: 1284 HPERVVLKVANSYYPHSKAS 1303


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 549 KRGRP-PNITSSIPLRSRRANTSAVSP 626
           KR RP PNI +S P  +R  +T  V+P
Sbjct: 128 KRDRPLPNIRNSAPSATRSHSTPCVAP 154


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = +3

Query: 357 YINDIPRSPETHLALFADDTAIYYSCRKMSLLHR 458
           Y+ ++ +SP+ +L +  D++ I    + +S+LH+
Sbjct: 516 YLLELEKSPKNNLLISMDESVIEIVQKSLSVLHK 549


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,527,285
Number of Sequences: 5004
Number of extensions: 75486
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)