Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_H06
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    28   1.6  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    27   4.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.4  
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni...    26   8.4  

>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 46  RPQNRRSARTSLSDNAFPRFLLVITPP 126
           RPQ +RS+   LS +AF +F+   +PP
Sbjct: 139 RPQAKRSSSRLLSTDAFSQFISSFSPP 165


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 237 DLFMEEIVPLVVSAASAIPSLVNAFSSSKPPQTD 338
           D+F  + +P++ ++A  IPSL  A   SK P T+
Sbjct: 241 DIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 19/81 (23%), Positives = 31/81 (38%)
 Frame = +1

Query: 520 NRTVSLCNHYRTSPPS*KATATRILVNLEAVVFPSAP*PXNTVTVDLCWTTADVTGXRSQ 699
           N T S    Y ++P +    AT       +V + S P     +T   C T+  +    + 
Sbjct: 426 NCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTP 485

Query: 700 CAWPTLSSSRITIGGSRPYAS 762
                L+++  T   S PY S
Sbjct: 486 VTSTPLTTTNCTTSTSVPYTS 506


>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
           Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 330

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 745 SRPYASXHPPPGNLGV 792
           S PY + HPP G +GV
Sbjct: 257 SLPYPAFHPPAGQIGV 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,058,974
Number of Sequences: 5004
Number of extensions: 55855
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)