Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_G24
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   0.74 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    28   1.6  
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    28   2.1  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   8.5  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect(2) = 0.74
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 773 PXPRXPPPPXLPP 811
           P P  PPPP LPP
Sbjct: 236 PAPPPPPPPTLPP 248



 Score = 21.4 bits (43), Expect(2) = 0.74
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = +2

Query: 728 PPAXXXXLXXPPXRXPXPRXPPPP 799
           P A       P    P P  PPPP
Sbjct: 174 PSAAAPATSLPSDYNPPPPPPPPP 197


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 162 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNR 64
           Y    ES + D+ +  SH+ A +I Q  R+G R
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 248 HRANTGRSSNELDRQTTELERR 313
           H+ + GR+  ELDR+ T+L++R
Sbjct: 21  HQRSLGRAERELDRERTKLDQR 42


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 44   MSTTYIILLPFLLTCAIASAAECENATSLS 133
            +S TYIILLPF   C     A  +++  +S
Sbjct: 1023 LSKTYIILLPFQSLCPGGKQANHQSSEKMS 1052


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,902
Number of Sequences: 5004
Number of extensions: 34196
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)