Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_G19
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    85   1e-17
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    83   4e-17
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   5.2  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 45/102 (44%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
 Frame = +3

Query: 87  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVIXC-VVPGKNCSGCSCCR 263
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+I       K         
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 264 NHRXPADVFVISSRXFGXRAVLKFAPPXGATPXWGKFQPXXF 389
               PADV VISSR +G RAVLKFA   GAT   G+F P  F
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNF 111


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 83.0 bits (196), Expect = 4e-17
 Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
 Frame = +3

Query: 75  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVIXC-VVPGKNCSGC 251
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++       K     
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 252 SCCRNHRXPADVFVISSRXFGXRAVLKFAPPXGATPXWGKFQPXXF 389
                   PADV V+S+R +G RAVLKFA   GAT   G+F P  F
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNF 110


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -2

Query: 683 PPXXFLGGGPXPPPXXXXXXKXGGXK 606
           PP    G GP PPP        GG +
Sbjct: 766 PPPGVAGAGPPPPPPPPPAVSAGGSR 791


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,409,354
Number of Sequences: 5004
Number of extensions: 40393
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)