Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_G19
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...    94   1e-19
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    30   1.6  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 54/118 (45%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
 Frame = +3

Query: 69  MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVIXCVVP-GKNCS 245
           MSGG    AL EEDV K+LA   HLG+ N+NFQM+ YVYKRR DG ++I       K   
Sbjct: 1   MSGGAAHSALTEEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLLL 60

Query: 246 GCSCCRNHRXPADVFVISSRXFGXRAVLKFAPPXGATPXWGKFQPXXFLLTXIQXGFR 419
                     PADV V+S+R +  RA+LKFA   GAT  +G+F P   L   IQ  F+
Sbjct: 61  AARAIAAVENPADVVVVSARPYAQRALLKFAAHTGATAIFGRFSPGC-LTNQIQKTFK 117


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/52 (28%), Positives = 17/52 (32%)
 Frame = +2

Query: 614 PPLXXXXXXXGGGXXPPPKXXXGGPXXXCXPPPXKKXXXXXXXGXXXXXPPP 769
           PP        G    PPP+    GP     PPP +        G     PPP
Sbjct: 336 PPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 387


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/52 (28%), Positives = 17/52 (32%)
 Frame = +2

Query: 614 PPLXXXXXXXGGGXXPPPKXXXGGPXXXCXPPPXKKXXXXXXXGXXXXXPPP 769
           PP        G    PPP+    GP     PPP +        G     PPP
Sbjct: 346 PPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,880,752
Number of Sequences: 27780
Number of extensions: 316405
Number of successful extensions: 717
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)