Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_G06
(936 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC111802-1|AAI11803.1| 465|Homo sapiens CHRNG protein protein. 34 0.65
Y08417-1|CAA69694.1| 458|Homo sapiens nicotinic acetylcholine r... 32 2.6
X67513-1|CAA47851.1| 423|Homo sapiens nicotinic acetylcholine ... 32 2.6
X01715-1|CAA25861.1| 520|Homo sapiens acetylcholine receptor ga... 32 2.6
U62438-1|AAB40116.1| 458|Homo sapiens nicotinic acetylcholine r... 32 2.6
BC069788-1|AAH69788.1| 458|Homo sapiens cholinergic receptor, n... 32 2.6
BC069703-1|AAH69703.1| 458|Homo sapiens cholinergic receptor, n... 32 2.6
BC069681-1|AAH69681.1| 458|Homo sapiens cholinergic receptor, n... 32 2.6
AF140765-1|AAD33063.1| 458|Homo sapiens neuronal acetylcholine ... 32 2.6
AC092165-3|AAY24103.1| 520|Homo sapiens unknown protein. 32 2.6
Y00762-1|CAA68731.1| 457|Homo sapiens protein ( Human mRNA for ... 31 8.0
X02502-1|CAA26344.1| 457|Homo sapiens acetylcholine receptor pr... 31 8.0
S77094-1|AAD14247.1| 457|Homo sapiens nicotinic acetylcholine r... 31 8.0
BC006314-1|AAH06314.1| 269|Homo sapiens CHRNA1 protein protein. 31 8.0
AJ306454-1|CAC34819.1| 497|Homo sapiens neuronal nicotinic acet... 31 8.0
AC018890-1|AAY14687.1| 457|Homo sapiens unknown protein. 31 8.0
>BC111802-1|AAI11803.1| 465|Homo sapiens CHRNG protein protein.
Length = 465
Score = 34.3 bits (75), Expect = 0.65
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +2
Query: 62 PFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKI--VVNLTLHLRHANI---R 226
P LL +A + ++ L+ YD + P + VVN++L L N+
Sbjct: 7 PLLLLLLLAVCLGAQGRNQEERLLADLMQNYDPNLRPAERDSDVVNVSLKLTLTNLISLN 66
Query: 227 ESESSVRIQADLQMNWIDKRLSWN 298
E E ++ ++M W D RL W+
Sbjct: 67 EREEALTTNVWIEMQWCDYRLRWD 90
>Y08417-1|CAA69694.1| 458|Homo sapiens nicotinic acetylcholine
receptor beta3 subunit precursor protein.
Length = 458
Score = 32.3 bits (70), Expect = 2.6
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 330 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDISTPXSMXV 485
V SE LW PD+VL A G + V +NG+V W + +M V
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVWTPPASYKSSCTMDV 157
>X67513-1|CAA47851.1| 423|Homo sapiens nicotinic acetylcholine
receptor beta-3 subunit protein.
Length = 423
Score = 32.3 bits (70), Expect = 2.6
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 330 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDISTPXSMXV 485
V SE LW PD+VL A G + V +NG+V W + +M V
Sbjct: 70 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVWTPPASYKSSCTMDV 122
>X01715-1|CAA25861.1| 520|Homo sapiens acetylcholine receptor gamma
chain precursor protein.
Length = 520
Score = 32.3 bits (70), Expect = 2.6
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = +2
Query: 50 IILLPFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKI--VVNLTLHLRHANI 223
++LL L C + N L+ D L+ YD + P + VVN++L L N+
Sbjct: 8 LLLLLLLAVCLGGTQRNLRNQEE-RLLAD-LMQNYDPNLRPAERDSDVVNVSLKLTLTNL 65
Query: 224 ---RESESSVRIQADLQMNWIDKRLSWN 298
E E ++ ++M W D RL W+
Sbjct: 66 ISLNEREEALTTNVWIEMQWCDYRLRWD 93
>U62438-1|AAB40116.1| 458|Homo sapiens nicotinic acetylcholine
receptor beta3 subunit precursor protein.
Length = 458
Score = 32.3 bits (70), Expect = 2.6
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 330 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDISTPXSMXV 485
V SE LW PD+VL A G + V +NG+V W + +M V
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVWTPPASYKSSCTMDV 157
>BC069788-1|AAH69788.1| 458|Homo sapiens cholinergic receptor,
nicotinic, beta 3 protein.
Length = 458
Score = 32.3 bits (70), Expect = 2.6
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 330 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDISTPXSMXV 485
V SE LW PD+VL A G + V +NG+V W + +M V
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVWTPPASYKSSCTMDV 157
>BC069703-1|AAH69703.1| 458|Homo sapiens cholinergic receptor,
nicotinic, beta 3 protein.
Length = 458
Score = 32.3 bits (70), Expect = 2.6
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 330 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDISTPXSMXV 485
V SE LW PD+VL A G + V +NG+V W + +M V
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVWTPPASYKSSCTMDV 157
>BC069681-1|AAH69681.1| 458|Homo sapiens cholinergic receptor,
nicotinic, beta 3 protein.
Length = 458
Score = 32.3 bits (70), Expect = 2.6
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 330 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDISTPXSMXV 485
V SE LW PD+VL A G + V +NG+V W + +M V
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVWTPPASYKSSCTMDV 157
>AF140765-1|AAD33063.1| 458|Homo sapiens neuronal acetylcholine
receptor beta-3 subunit precursor protein.
Length = 458
Score = 32.3 bits (70), Expect = 2.6
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 330 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDISTPXSMXV 485
V SE LW PD+VL A G + V +NG+V W + +M V
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVWTPPASYKSSCTMDV 157
>AC092165-3|AAY24103.1| 520|Homo sapiens unknown protein.
Length = 520
Score = 32.3 bits (70), Expect = 2.6
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = +2
Query: 50 IILLPFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKI--VVNLTLHLRHANI 223
++LL L C + N L+ D L+ YD + P + VVN++L L N+
Sbjct: 8 LLLLLLLAVCLGGTQRNLRNQEE-RLLAD-LMQNYDPNLRPAERDSDVVNVSLKLTLTNL 65
Query: 224 ---RESESSVRIQADLQMNWIDKRLSWN 298
E E ++ ++M W D RL W+
Sbjct: 66 ISLNEREEALTTNVWIEMQWCDYRLRWD 93
>Y00762-1|CAA68731.1| 457|Homo sapiens protein ( Human mRNA for
muscle acetylcholine receptor alpha-subunit. ).
Length = 457
Score = 30.7 bits (66), Expect = 8.0
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Frame = +2
Query: 62 PFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPP--DSKIVVNLTLHLRHA---NIR 226
P LL ++ SA + + ++ L Y P D + VV +T+ L+ N+
Sbjct: 5 PLLLLFSLCSAGLVLGSEHETRLVAKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVD 64
Query: 227 ESESSVRIQADLQMNWIDKRLSWNAGXVG 313
E V L+ W+D L WN G
Sbjct: 65 EVNQIVTTNVRLKQQWVDYNLKWNPDDYG 93
>X02502-1|CAA26344.1| 457|Homo sapiens acetylcholine receptor
protein.
Length = 457
Score = 30.7 bits (66), Expect = 8.0
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Frame = +2
Query: 62 PFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPP--DSKIVVNLTLHLRHA---NIR 226
P LL ++ SA + + ++ L Y P D + VV +T+ L+ N+
Sbjct: 5 PLLLLFSLCSAGLVLGSEHETRLVAKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVD 64
Query: 227 ESESSVRIQADLQMNWIDKRLSWNAGXVG 313
E V L+ W+D L WN G
Sbjct: 65 EVNQIVTTNVRLKQQWVDYNLKWNPDDYG 93
>S77094-1|AAD14247.1| 457|Homo sapiens nicotinic acetylcholine
receptor alpha subunit|AChR protein.
Length = 457
Score = 30.7 bits (66), Expect = 8.0
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Frame = +2
Query: 62 PFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPP--DSKIVVNLTLHLRHA---NIR 226
P LL ++ SA + + ++ L Y P D + VV +T+ L+ N+
Sbjct: 5 PLLLLFSLCSAGLVLGSEHETRLVAKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVD 64
Query: 227 ESESSVRIQADLQMNWIDKRLSWNAGXVG 313
E V L+ W+D L WN G
Sbjct: 65 EVNQIVTTNVRLKQQWVDYNLKWNPDDYG 93
>BC006314-1|AAH06314.1| 269|Homo sapiens CHRNA1 protein protein.
Length = 269
Score = 30.7 bits (66), Expect = 8.0
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Frame = +2
Query: 62 PFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPP--DSKIVVNLTLHLRHA---NIR 226
P LL ++ SA + + ++ L Y P D + VV +T+ L+ N+
Sbjct: 5 PLLLLFSLCSAGLVLGSEHETRLVAKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVD 64
Query: 227 ESESSVRIQADLQMNWIDKRLSWNAGXVG 313
E V L+ W+D L WN G
Sbjct: 65 EVNQIVTTNVRLKQQWVDYNLKWNPDDYG 93
>AJ306454-1|CAC34819.1| 497|Homo sapiens neuronal nicotinic
acetylcholine receptor beta-4 subunit protein.
Length = 497
Score = 30.7 bits (66), Expect = 8.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 312 GCSTWLVSSERLWRPDVVLLXAXATTAGDYALRARVSNNGSVSWI 446
G + + ++R+W PD+VL T V +NGSV W+
Sbjct: 99 GVNILRIPAKRIWLPDIVLYNNDGTYEVSVYTNLIVRSNGSVLWL 143
>AC018890-1|AAY14687.1| 457|Homo sapiens unknown protein.
Length = 457
Score = 30.7 bits (66), Expect = 8.0
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Frame = +2
Query: 62 PFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPP--DSKIVVNLTLHLRHA---NIR 226
P LL ++ SA + + ++ L Y P D + VV +T+ L+ N+
Sbjct: 5 PLLLLFSLCSAGLVLGSEHETRLVAKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVD 64
Query: 227 ESESSVRIQADLQMNWIDKRLSWNAGXVG 313
E V L+ W+D L WN G
Sbjct: 65 EVNQIVTTNVRLKQQWVDYNLKWNPDDYG 93
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,226,891
Number of Sequences: 237096
Number of extensions: 1977643
Number of successful extensions: 4340
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4340
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12270013262
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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