Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_G06
(936 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 35 0.001
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 33 0.005
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 32 0.007
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 29 0.061
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 29 0.080
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 27 0.18
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 27 0.24
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.43
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.43
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 26 0.43
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.56
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 26 0.56
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 26 0.56
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.75
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.75
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.75
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.75
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.75
DQ435327-1|ABD92642.1| 145|Apis mellifera OBP10 protein. 25 0.99
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 25 1.3
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 24 1.7
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 24 2.3
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 23 4.0
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 34.7 bits (76), Expect = 0.001
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +2
Query: 101 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESSVRIQADLQ 265
C++ TS S + L YDRD P+ K ++ L ++H N+ E +V L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 266 MNWIDKRLSWNA 301
+ W L+W +
Sbjct: 88 LMWEQSHLTWKS 99
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.005
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +2
Query: 107 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESSVRIQADLQMNW 274
N +++S ++D+LL YD PD V + + +R I E + + + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 275 IDKRLSWNAG 304
+D+RL++ G
Sbjct: 62 VDRRLAFQGG 71
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 32.3 bits (70), Expect = 0.007
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Frame = +2
Query: 50 IILLPFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPP------DSKIVVNLTLHLR 211
++LL FLL + + + ++D++L YD P D +V + L +R
Sbjct: 9 LVLLTFLLHPSRCTQGKVNYREKEKEVLDNILGGYDARIRPSGENATDGPAIVRVNLFVR 68
Query: 212 H-ANIRESESSVRIQADLQMNWIDKRLSWNAGXVGLQHLAGVLGTLVEAGR 361
A I + + +Q + W+D+RL +N L++L TL +A R
Sbjct: 69 SIATISDIKMEYSVQLTFREQWLDERLRFNDFGGRLKYL-----TLTDASR 114
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 29.1 bits (62), Expect = 0.061
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 330 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSW 443
V S+ +WRPD+VL A A +A + + G V W
Sbjct: 105 VPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEW 143
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 28.7 bits (61), Expect = 0.080
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 330 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSW 443
V S+ +WRPD+VL A A +A ++ G V W
Sbjct: 101 VPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEW 139
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 27.5 bits (58), Expect = 0.18
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 330 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWI 446
+ RLW+PDV++ A G Y V NNG+ ++
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCLYV 139
Score = 21.8 bits (44), Expect = 9.2
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Frame = +2
Query: 80 AIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESSV 244
A+A++ + +++ LL TY+ P +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 245 RIQADLQMNWIDKRLSWNAGXVG 313
L++ W D + WN G
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYG 93
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 27.1 bits (57), Expect = 0.24
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +3
Query: 312 GCSTWLVSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSW 443
G V SE +W PD+VL A +A + G VSW
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNADGNYEVTLMTKATLKYTGDVSW 148
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 26.2 bits (55), Expect = 0.43
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 330 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWI 446
++ +LW+PD+++ A G Y V++NGS ++
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYV 170
Score = 25.4 bits (53), Expect = 0.75
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 218 NIRESESSVRIQADLQMNWIDKRLSWNAGXVG 313
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 26.2 bits (55), Expect = 0.43
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 330 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWI 446
++ +LW+PD+++ A G Y V++NGS ++
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYV 170
Score = 25.4 bits (53), Expect = 0.75
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 218 NIRESESSVRIQADLQMNWIDKRLSWNAGXVG 313
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 26.2 bits (55), Expect = 0.43
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +3
Query: 312 GCSTWLVSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSW 443
G T V SE +W PD+VL A +A + + G V W
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHHTGKVVW 135
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.56
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 330 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWI 446
++ +LW+PD+++ A G Y V++NGS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGSCLYV 102
Score = 25.4 bits (53), Expect = 0.75
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 218 NIRESESSVRIQADLQMNWIDKRLSWNAGXVG 313
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 25.8 bits (54), Expect = 0.56
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 339 ERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWI 446
+++W+PD+VL A Y + NG V W+
Sbjct: 106 DKVWKPDIVLFNNADGNYEVRYKSNVLIYPNGDVLWV 142
Score = 23.4 bits (48), Expect = 3.0
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 179 KIVVNLTL-HLRHANIRESESSVRIQADLQMNWIDKRLSWNAGXVG 313
K+ VN L ++ N+ E ++ L+ W D +L W+ G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 25.8 bits (54), Expect = 0.56
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 330 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSW 443
V S+ +WRPD+VL A +A V +G V W
Sbjct: 105 VPSDHIWRPDIVLYNNADGNYEVTLMTKATVYYSGLVVW 143
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.75
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 218 NIRESESSVRIQADLQMNWIDKRLSWNAGXVG 313
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.8 bits (49), Expect = 2.3
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 330 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWI 446
++ +LW+PD+++ A G Y V+++GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.75
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 218 NIRESESSVRIQADLQMNWIDKRLSWNAGXVG 313
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.8 bits (49), Expect = 2.3
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 330 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWI 446
++ +LW+PD+++ A G Y V+++GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.75
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 218 NIRESESSVRIQADLQMNWIDKRLSWNAGXVG 313
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.8 bits (49), Expect = 2.3
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 330 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWI 446
++ +LW+PD+++ A G Y V+++GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.75
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 218 NIRESESSVRIQADLQMNWIDKRLSWNAGXVG 313
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.8 bits (49), Expect = 2.3
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 330 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWI 446
++ +LW+PD+++ A G Y V+++GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.75
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 218 NIRESESSVRIQADLQMNWIDKRLSWNAGXVG 313
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.8 bits (49), Expect = 2.3
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 330 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWI 446
++ +LW+PD+++ A G Y V+++GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
>DQ435327-1|ABD92642.1| 145|Apis mellifera OBP10 protein.
Length = 145
Score = 25.0 bits (52), Expect = 0.99
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 47 YIILLPFLLTCAIAS-AAECENATSLSLMIDSLLAT 151
Y ILL L+TC I S + C T S + D ++AT
Sbjct: 3 YSILLSLLITCLICSPSVHC--GTRPSFVSDEMIAT 36
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 24.6 bits (51), Expect = 1.3
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = +3
Query: 339 ERLWRPDVVLLXAXATTAGDYAL---RARVSNNGSVSWIKRLDISTPXSMXVR 488
ER+WRPD + + R+S +G + + RL I M +R
Sbjct: 115 ERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMRLTIKAKCPMELR 167
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 24.2 bits (50), Expect = 1.7
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +3
Query: 306 EWGCSTWL-VSSERLWRPDVVL 368
E+G T L V SE +W PD+VL
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVL 109
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 23.8 bits (49), Expect = 2.3
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Frame = +3
Query: 330 VSSERLWRPDVVLLXAXATTAGDYALRAR--VSNNGSVSWI 446
V R+WRPD +L + VS+ G V W+
Sbjct: 82 VPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVWL 122
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 23.0 bits (47), Expect = 4.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 497 PTTCRLARSSSVSC 538
PTTC + S SVSC
Sbjct: 146 PTTCLVFSSGSVSC 159
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,396
Number of Sequences: 438
Number of extensions: 3329
Number of successful extensions: 38
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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