Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_G03
(863 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 34 0.030
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 32 0.12
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.28
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 31 0.28
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.49
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 1.1
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 28 1.5
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 28 2.0
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.6
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.6
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.4
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 3.4
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 27 4.5
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.5
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 27 4.5
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 26 6.0
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 6.0
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 7.9
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 26 7.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 7.9
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 33.9 bits (74), Expect = 0.030
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +3
Query: 543 LAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSEAPSAYLTPSSL 722
LA+ AT T S+NP T I N + K F+ PP++++ P +L P+S
Sbjct: 682 LALPATVTTSANPLGFKSTIQRPIPIKNNEDSDSCKAFSQA--PPIATKKPPTFLKPNSP 739
Query: 723 GMAKGVSP 746
AK V P
Sbjct: 740 EYAKTVIP 747
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 31.9 bits (69), Expect = 0.12
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +3
Query: 528 SSHPPLAISATSTRSSNPRFHTPTTPDLTSISINPLTP-YXKEFAPGLKPPLSSEAPSAY 704
+S PP ++S+ FHTPT P T +S +P + + PLS +A S
Sbjct: 120 NSSPPNSLSSQPKHQEFHLFHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAAS-- 177
Query: 705 LTPSSLGMAKGVSPPYFQVNDESQA 779
LT S L + SPP V +S +
Sbjct: 178 LTSSPLKDFQS-SPPLSTVLQKSHS 201
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.7 bits (66), Expect = 0.28
Identities = 32/110 (29%), Positives = 40/110 (36%), Gaps = 2/110 (1%)
Frame = +3
Query: 519 PYASSHPPLAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSEAPS 698
P +S PP+ A SS P P P + S L P + PP S+AP
Sbjct: 152 PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPV 211
Query: 699 AYLT--PSSLGMAKGVSPPYFQVNDESQAXXXXXXXXXXXXXPPQINPSS 842
A + PSS G +P V ES PP + PSS
Sbjct: 212 ANTSSRPSSFAPPAGHAP---NVTSESPKFPNRGPSIPSASVPP-VPPSS 257
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 30.7 bits (66), Expect = 0.28
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Frame = +3
Query: 519 PYASSHPPLAISATSTRSSNPRF--HTPTTP-DLTSISINPLTPYXKEFAPGLKPPLSSE 689
PY P ++A S SS+P P TP + S ++NP Y + PP
Sbjct: 956 PYTPVAPQSPVAAASRISSSPNMPPSNPYTPIAVASSTVNPAHTYKPHGGSQIVPPPKQP 1015
Query: 690 APSAY-LTPSSLGMAKGVSPPYFQVNDES 773
A L P++ A PP V S
Sbjct: 1016 ANRVVPLPPTASQRASAYEPPTVSVPSPS 1044
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.9 bits (64), Expect = 0.49
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +3
Query: 522 YASSHPPLAISATSTRSSNPRFHTPTTPDLTSIS 623
Y SS IS +ST N FH PT TS S
Sbjct: 795 YLSSSSSRTISTSSTNEYNTSFHAPTVSSTTSSS 828
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 1.1
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +1
Query: 277 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 447
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 448 DVTVEGVNVLATPSSS 495
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 4 WDDLFMEEIVPLXVSAASAIPSLVNAFSSSKPPQTD 111
W D+F + +P+ ++A IPSL A SK P T+
Sbjct: 239 WFDIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 27.9 bits (59), Expect = 2.0
Identities = 21/80 (26%), Positives = 36/80 (45%)
Frame = +3
Query: 480 HPFILSHYYWRSRPYASSHPPLAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFA 659
HPF+ ++ P+A+ P L + P +P + + S+NP TP +
Sbjct: 233 HPFMQES---KTSPFATRRPSL----NTDHHGRPILLSPL--NYQNSSLNPSTPSPFGGS 283
Query: 660 PGLKPPLSSEAPSAYLTPSS 719
P + PP+S+ +P P S
Sbjct: 284 PVMHPPVSNLSPRTPAVPMS 303
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 524 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 405
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/64 (26%), Positives = 26/64 (40%)
Frame = +3
Query: 558 TSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSEAPSAYLTPSSLGMAKG 737
TST ++ +TP +S ++N TP P++S TP + A
Sbjct: 1592 TSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALN 1651
Query: 738 VSPP 749
SPP
Sbjct: 1652 TSPP 1655
Score = 26.6 bits (56), Expect = 4.5
Identities = 17/64 (26%), Positives = 25/64 (39%)
Frame = +3
Query: 558 TSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSEAPSAYLTPSSLGMAKG 737
TST ++ +TP +S +N TP A PP++S TP +
Sbjct: 1616 TSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSPPITSSTVVNSSTPITSSTVVN 1675
Query: 738 VSPP 749
S P
Sbjct: 1676 TSTP 1679
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/64 (26%), Positives = 26/64 (40%)
Frame = +3
Query: 558 TSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSEAPSAYLTPSSLGMAKG 737
TST ++ +TP +S +N TP A P++S + TP + A
Sbjct: 1724 TSTPITSSTVVNSSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALN 1783
Query: 738 VSPP 749
S P
Sbjct: 1784 TSTP 1787
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 259 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 372
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.1 bits (57), Expect = 3.4
Identities = 21/68 (30%), Positives = 28/68 (41%)
Frame = +3
Query: 519 PYASSHPPLAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSEAPS 698
P A PP A ++TS SS P ++ NP AP +P AP+
Sbjct: 401 PQAGHPPPWAAASTSVSSSTSSPAPWAKPASSAAPSNP--------APWQQPAAPQSAPA 452
Query: 699 AYLTPSSL 722
+ PSSL
Sbjct: 453 LSMNPSSL 460
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 531 SHPPLAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPP 677
S+ P +T++ + N PT +S I L+P K+ + G +PP
Sbjct: 131 SYEPTTFPSTTSITENLPTIDPTRSTRSSSHIQSLSPESKQTSDGHRPP 179
Score = 26.2 bits (55), Expect = 6.0
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 546 AISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSEAPSAYLTPSS 719
A+ ++ S F PTT S+SI+P K A +P + ++ S TP++
Sbjct: 69 AVETNASASHETSFALPTTSPAASLSISP----TKSAAVSSEPNVEADVKSLSSTPAA 122
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +1
Query: 340 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 429
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 26.6 bits (56), Expect = 4.5
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Frame = +3
Query: 528 SSHPPLAISATSTRSSNPRFHTPTTPDLTSISINPLTP-----YXKEFAPGLKPPLSSEA 692
S P L+ + S P P+TP + SI+P TP Y + A L PLS +
Sbjct: 282 SDSPELSADKVLSHCS-PIDARPSTPSCPNASISPKTPNTGDHYGFDGAEYLGTPLSVGS 340
Query: 693 PSAYL 707
+AYL
Sbjct: 341 TTAYL 345
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 26.2 bits (55), Expect = 6.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 533 PPSPGDLGYINPIIKSPIPYTNHP 604
PP PGD+ + NP++ P + P
Sbjct: 218 PPQPGDIVFSNPMLGGPDHKVSQP 241
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 6.0
Identities = 18/75 (24%), Positives = 28/75 (37%)
Frame = +3
Query: 537 PPLAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSEAPSAYLTPS 716
P +A+ + + P P P + + NP TP+ P + A + L P
Sbjct: 247 PSMALLPSKQSTYWPALAAPVYPSMKDVPNNPFTPF-SPINPYYAKSWNHTASAPLLPP- 304
Query: 717 SLGMAKGVSPPYFQV 761
G+ G PY V
Sbjct: 305 --GLKNGSDYPYLSV 317
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 509 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 375
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 7.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 100 GVWKKRKH*PRREWPKRQKRXKAQF 26
G WKK + + EW K ++ KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 7.9
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 570 SSNPRFHTPTTPDLTSISIN-PLTPYXKEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSP 746
SSN P P ++ + + PL P + P PP APS P L ++ VS
Sbjct: 331 SSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP---PPPPRSAPSTGRQPPPLSSSRAVSN 387
Query: 747 P 749
P
Sbjct: 388 P 388
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/70 (24%), Positives = 26/70 (37%)
Frame = +1
Query: 277 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 456
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 457 VEGVNVLATP 486
V +TP
Sbjct: 540 YTSTPVTSTP 549
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,294,141
Number of Sequences: 5004
Number of extensions: 65985
Number of successful extensions: 341
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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