Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_F24
(903 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 72 1e-12
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 51 2e-06
AY052101-1|AAK93525.1| 607|Drosophila melanogaster SD04973p pro... 33 0.41
AE013599-3005|AAF57474.1| 567|Drosophila melanogaster CG8929-PC... 33 0.41
AE013599-3004|AAF57475.2| 607|Drosophila melanogaster CG8929-PB... 33 0.41
AE013599-3003|AAF57473.2| 607|Drosophila melanogaster CG8929-PA... 33 0.41
AE014296-2787|AAF49424.2| 2224|Drosophila melanogaster CG9695-PA... 31 2.2
AE013599-3283|AAM71018.2| 2968|Drosophila melanogaster CG13492-P... 31 2.2
AE013599-3282|AAF46766.2| 2931|Drosophila melanogaster CG13492-P... 31 2.2
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 71.7 bits (168), Expect = 1e-12
Identities = 34/87 (39%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Frame = +2
Query: 38 AGSLSRLLPNVGGPDMVVRRLYTGVVRSMALYGAPV-RCHALTRDDVAALRRPQRAIAVR 214
A +L+R++PNVGGP + RRL V ++ LY AP+ C + + + + R R +A+R
Sbjct: 745 AAALARIMPNVGGPRLPARRLLVAVSKATLLYAAPIWSCVSTKKTYLDSARAVSRTMALR 804
Query: 215 AVRGYRTVSFEAACVLAGTPPWDLEVE 295
+RG+RT+S +AA L+G P DL+++
Sbjct: 805 LIRGFRTISDDAAHALSGITPIDLDIK 831
Score = 50.4 bits (115), Expect = 3e-06
Identities = 30/66 (45%), Positives = 35/66 (53%)
Frame = +3
Query: 513 FRATQVLTGHGCFGRYLHLIARREPTPKCHHCSGCSEDTAEHTLAYXPSFAEXRRVLVAK 692
+ TQ LT HGCF YL R T +C +C+ E TAEH L + FAE R LVA
Sbjct: 886 YHMTQFLTDHGCFRGYLCRF-RHVDTAQCLYCTDAVE-TAEHILLHCSRFAEERAQLVAL 943
Query: 693 IGPXLS 710
G LS
Sbjct: 944 AGSPLS 949
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 50.8 bits (116), Expect = 2e-06
Identities = 48/162 (29%), Positives = 68/162 (41%), Gaps = 9/162 (5%)
Frame = +2
Query: 14 LGPRLMAAAGSLSRLLPNVGGPDMVVRR-LYTGVVRSMALYGAPVRCHALTRDDVAALRR 190
L R+ G+L+R+L G RR +Y G++ L+GAPV T + VAA RR
Sbjct: 754 LRQRMTGVVGALARVLRADWGFSPRARRTIYDGLMAPCVLFGAPVWYD--TAEQVAAQRR 811
Query: 191 P---QRAIAVRAVRGYRTVSFEAACVLAGTPPWDLEVEALAADYAWRCDLRSREEPRPGA 361
QR I + + RTVS A VL G PP DL + LA Y + E
Sbjct: 812 LASCQRLILLGCLSVCRTVSTVALQVLGGAPPLDLAAKLLAIKYKLKRGFPLEENDWLYG 871
Query: 362 AEVRARKLESRR-----AVFEAWSRRLADPAYGRRTVEAIRP 472
++ E R+ + ++W R D + R P
Sbjct: 872 EDIACLSWEQRKTRLEECLIQSWQNRWDDDSEPGRVTHRFIP 913
Score = 29.5 bits (63), Expect = 6.6
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +3
Query: 510 TFRATQVLTGHGCFGRYLHLIARREPTPKCHHCSGCSEDTAEHTLAYXPSFAEXR 674
+ R + +LTGHG F +LH A + T C C ED H L P +A+ R
Sbjct: 927 SMRTSFLLTGHGSFNAFLHGRALSD-TTAC-ACGDPYEDWM-HILCACPLYADLR 978
>AY052101-1|AAK93525.1| 607|Drosophila melanogaster SD04973p
protein.
Length = 607
Score = 33.5 bits (73), Expect = 0.41
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Frame = -2
Query: 407 RTRHAEIQASALELPPRRDAAPPWSGDHIAKRNPQRAPPLPGXXXXXXXXXXXXXXXRCG 228
R+R ++ L PPRR + P + +R R+PP+P G
Sbjct: 131 RSRSRLRKSPPLSPPPRRRSPPMAMHSGMDRRGGPRSPPMPRSPNNSHDALMRRPGNGHG 190
Query: 227 --THEPP*PQSHAADVATLRRRHVSGRGTLRERRTVPL 120
PP P S + ++LRR+ + R L RR+ PL
Sbjct: 191 GRPRSPPEP-SGGSSSSSLRRKPNASRSPLGRRRSPPL 227
>AE013599-3005|AAF57474.1| 567|Drosophila melanogaster CG8929-PC,
isoform C protein.
Length = 567
Score = 33.5 bits (73), Expect = 0.41
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Frame = -2
Query: 407 RTRHAEIQASALELPPRRDAAPPWSGDHIAKRNPQRAPPLPGXXXXXXXXXXXXXXXRCG 228
R+R ++ L PPRR + P + +R R+PP+P G
Sbjct: 91 RSRSRLRKSPPLSPPPRRRSPPMAMHSGMDRRGGPRSPPMPRSPNNSHDALMRRPGNGHG 150
Query: 227 --THEPP*PQSHAADVATLRRRHVSGRGTLRERRTVPL 120
PP P S + ++LRR+ + R L RR+ PL
Sbjct: 151 GRPRSPPEP-SGGSSSSSLRRKPNASRSPLGRRRSPPL 187
>AE013599-3004|AAF57475.2| 607|Drosophila melanogaster CG8929-PB,
isoform B protein.
Length = 607
Score = 33.5 bits (73), Expect = 0.41
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Frame = -2
Query: 407 RTRHAEIQASALELPPRRDAAPPWSGDHIAKRNPQRAPPLPGXXXXXXXXXXXXXXXRCG 228
R+R ++ L PPRR + P + +R R+PP+P G
Sbjct: 131 RSRSRLRKSPPLSPPPRRRSPPMAMHSGMDRRGGPRSPPMPRSPNNSHDALMRRPGNGHG 190
Query: 227 --THEPP*PQSHAADVATLRRRHVSGRGTLRERRTVPL 120
PP P S + ++LRR+ + R L RR+ PL
Sbjct: 191 GRPRSPPEP-SGGSSSSSLRRKPNASRSPLGRRRSPPL 227
>AE013599-3003|AAF57473.2| 607|Drosophila melanogaster CG8929-PA,
isoform A protein.
Length = 607
Score = 33.5 bits (73), Expect = 0.41
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Frame = -2
Query: 407 RTRHAEIQASALELPPRRDAAPPWSGDHIAKRNPQRAPPLPGXXXXXXXXXXXXXXXRCG 228
R+R ++ L PPRR + P + +R R+PP+P G
Sbjct: 131 RSRSRLRKSPPLSPPPRRRSPPMAMHSGMDRRGGPRSPPMPRSPNNSHDALMRRPGNGHG 190
Query: 227 --THEPP*PQSHAADVATLRRRHVSGRGTLRERRTVPL 120
PP P S + ++LRR+ + R L RR+ PL
Sbjct: 191 GRPRSPPEP-SGGSSSSSLRRKPNASRSPLGRRRSPPL 227
>AE014296-2787|AAF49424.2| 2224|Drosophila melanogaster CG9695-PA
protein.
Length = 2224
Score = 31.1 bits (67), Expect = 2.2
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +2
Query: 164 RDDVAALRRPQRAIAVRAVRGYRTVSFEAACVLAGTPPWDLEVEALAADYAWRCDLRSRE 343
R V +L+RP + + V + +G+ PWD E AL +W+
Sbjct: 1779 RSGVRSLQRPNQLGGDVVLPSNAVVGPQRLRKSSGSSPWDGEEPALPGQKSWK------- 1831
Query: 344 EPRP-GAAEVRARKLESRRAV 403
RP AAE R ESRRAV
Sbjct: 1832 --RPASAAETERRLAESRRAV 1850
>AE013599-3283|AAM71018.2| 2968|Drosophila melanogaster CG13492-PB,
isoform B protein.
Length = 2968
Score = 31.1 bits (67), Expect = 2.2
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 502 DVSPSERRRCSRDTAVSVATCTSSP 576
++ P++RRRC R +V+ TC+S+P
Sbjct: 762 EIYPADRRRCHRCNSVTDPTCSSAP 786
>AE013599-3282|AAF46766.2| 2931|Drosophila melanogaster CG13492-PA,
isoform A protein.
Length = 2931
Score = 31.1 bits (67), Expect = 2.2
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 502 DVSPSERRRCSRDTAVSVATCTSSP 576
++ P++RRRC R +V+ TC+S+P
Sbjct: 725 EIYPADRRRCHRCNSVTDPTCSSAP 749
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,358,552
Number of Sequences: 53049
Number of extensions: 841614
Number of successful extensions: 3181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3163
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4403028645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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