Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_F24
         (903 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040653-12|AAB95023.2|  257|Caenorhabditis elegans Hypothetical...    32   0.49 
Z99283-7|CAB16537.2|  985|Caenorhabditis elegans Hypothetical pr...    31   0.85 
Z92782-14|CAI46605.1|  985|Caenorhabditis elegans Hypothetical p...    31   0.85 
U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical pr...    30   2.6  
DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determini...    30   2.6  
Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U52517-1|AAA97927.1|  846|Caenorhabditis elegans hum-3 protein.        29   3.4  
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    29   3.4  
AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical...    29   3.4  
Z50756-4|CAA90639.1|  482|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z50741-5|CAA90612.1|  482|Caenorhabditis elegans Hypothetical pr...    29   4.5  
L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembl...    29   6.0  
AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein...    29   6.0  

>AF040653-12|AAB95023.2|  257|Caenorhabditis elegans Hypothetical
           protein K05F6.10 protein.
          Length = 257

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
 Frame = -3

Query: 436 GVRQAAR-----PRLEHGTPRFKLP---RSNFRRAGTRLLPGAEITSPSVIRSERLHFQV 281
           G+RQA R     P  +   P    P   ++NF R GTR +   + T+P + +SE +    
Sbjct: 55  GIRQARRQDESSPSFKKSEPLLSPPTTAKANFGREGTRQVRRQDDTTPGITKSEPI--SP 112

Query: 280 PGRRPGEHARRLERDGAVPTNRP 212
            G      ARRLE     P  RP
Sbjct: 113 LGHGSIMQARRLEEVWKHPPRRP 135


>Z99283-7|CAB16537.2|  985|Caenorhabditis elegans Hypothetical
           protein Y70C5C.1 protein.
          Length = 985

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -3

Query: 628 VSSLQPLQWWHFGVGSLRAMRCR*RPK-QPCPVSTCVARKVRR 503
           + S  P QW H  +  LRA+  R + K QP  +++CVA +++R
Sbjct: 364 MQSSGPKQWVHEELAELRAVTFRFKDKEQPMAMASCVAARLQR 406


>Z92782-14|CAI46605.1|  985|Caenorhabditis elegans Hypothetical
           protein Y70C5C.1 protein.
          Length = 985

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -3

Query: 628 VSSLQPLQWWHFGVGSLRAMRCR*RPK-QPCPVSTCVARKVRR 503
           + S  P QW H  +  LRA+  R + K QP  +++CVA +++R
Sbjct: 364 MQSSGPKQWVHEELAELRAVTFRFKDKEQPMAMASCVAARLQR 406


>U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical
           protein F52C9.7 protein.
          Length = 451

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 37/152 (24%), Positives = 56/152 (36%), Gaps = 8/152 (5%)
 Frame = -3

Query: 517 RKVRRPRSIHPVQEDRADRLD--GPSPVGGVRQAARPRLEHGTPRFKLPRSNFR-----R 359
           +K R   S     ++R +R     PSP    R + +PR    +PR + PRS  R     R
Sbjct: 134 KKKRSSSSSDESSDERVERKRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSPKRSREESR 193

Query: 358 AGTRLLPGAEITSPSVIRSE-RLHFQVPGRRPGEHARRLERDGAVPTNRPDRNRTLRTSQ 182
             +R    +   SP   R + R   + P R     A RL R    P    +  R +  S+
Sbjct: 194 KLSRKPSSSRSKSPRRSREDPRKVARKPSRSRSRSAERLRRKSRSPRRSREEPRKMSRSR 253

Query: 181 RCDVVTCQGVAPYGSAVQCH*PHHPRVEAAHH 86
                       + S    H P H + + + H
Sbjct: 254 SRSADKASSSRQFDS----HIPRHLQQQRSRH 281


>DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determining
           protein MOG-3 protein.
          Length = 451

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 37/152 (24%), Positives = 56/152 (36%), Gaps = 8/152 (5%)
 Frame = -3

Query: 517 RKVRRPRSIHPVQEDRADRLD--GPSPVGGVRQAARPRLEHGTPRFKLPRSNFR-----R 359
           +K R   S     ++R +R     PSP    R + +PR    +PR + PRS  R     R
Sbjct: 134 KKKRSSSSSDESSDERVERKRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSPKRSREESR 193

Query: 358 AGTRLLPGAEITSPSVIRSE-RLHFQVPGRRPGEHARRLERDGAVPTNRPDRNRTLRTSQ 182
             +R    +   SP   R + R   + P R     A RL R    P    +  R +  S+
Sbjct: 194 KLSRKPSSSRSKSPRRSREDPRKVARKPSRSRSRSAERLRRKSRSPRRSREEPRKMSRSR 253

Query: 181 RCDVVTCQGVAPYGSAVQCH*PHHPRVEAAHH 86
                       + S    H P H + + + H
Sbjct: 254 SRSADKASSSRQFDS----HIPRHLQQQRSRH 281


>Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/86 (24%), Positives = 35/86 (40%)
 Frame = +3

Query: 201 RLRSGRFVGTAPXXXXXXACSPGRLPGTWKWRRSLRITLGDVISAPGRSRVPARRKFERG 380
           R++S R  G         +CS   +  T    R    +  + ++ PGRS +      +  
Sbjct: 420 RMKS-RLQGVEEMRSRMGSCSSASMMSTRNQHRIYGSSF-NTLTVPGRSMITPNMSRDVS 477

Query: 381 SLNLGVPCSRRGLAAWRTPPTGDGPS 458
            L+L  P S+      ++P  GD PS
Sbjct: 478 QLSLCRPTSQMSFCRPKSPMAGDSPS 503


>U52517-1|AAA97927.1|  846|Caenorhabditis elegans hum-3 protein.
          Length = 846

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +2

Query: 317 WRCDLRSREEPRPGAAEVRARKLESRRAVFEAWSRRLA 430
           WRC  RSR  P     EV+ R  E R  +  A S RLA
Sbjct: 774 WRC--RSRSSPSEAEEEVKRRNKEERDRLDAAVSSRLA 809


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -3

Query: 553 PKQPCPVSTCVARKVRRPRSIHPVQEDRADRLDGPSPVGGVRQAARPRLEHGT-PRFKLP 377
           P  P P  +   R+ RRPR++  +  + A     P+P G  R  +  ++   T P  + P
Sbjct: 508 PPPPSPSPSTPGRRGRRPRTLSTMSMEPAAAAVTPAPRGRPRSRSAAKVSENTEPLSEAP 567

Query: 376 RSNFRRAGTR 347
            +  +R   R
Sbjct: 568 SAPVKRGRGR 577


>AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/86 (24%), Positives = 35/86 (40%)
 Frame = +3

Query: 201 RLRSGRFVGTAPXXXXXXACSPGRLPGTWKWRRSLRITLGDVISAPGRSRVPARRKFERG 380
           R++S R  G         +CS   +  T    R    +  + ++ PGRS +      +  
Sbjct: 420 RMKS-RLQGVEEMRSRMGSCSSASMMSTRNQHRIYGSSF-NTLTVPGRSMITPNMSRDVS 477

Query: 381 SLNLGVPCSRRGLAAWRTPPTGDGPS 458
            L+L  P S+      ++P  GD PS
Sbjct: 478 QLSLCRPTSQMSFCRPKSPMAGDSPS 503


>Z50756-4|CAA90639.1|  482|Caenorhabditis elegans Hypothetical
           protein T08D10.1 protein.
          Length = 482

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 553 PKQPCPVSTCVARKVRRPRSIH--PVQEDRADRLDGPSPV 440
           P Q  P S   AR  +  RS H  P Q+ R ++  GP+PV
Sbjct: 105 PSQYTPASVSTARAPQFHRSSHVTPSQQQRIEQAFGPAPV 144


>Z50741-5|CAA90612.1|  482|Caenorhabditis elegans Hypothetical
           protein T08D10.1 protein.
          Length = 482

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 553 PKQPCPVSTCVARKVRRPRSIH--PVQEDRADRLDGPSPV 440
           P Q  P S   AR  +  RS H  P Q+ R ++  GP+PV
Sbjct: 105 PSQYTPASVSTARAPQFHRSSHVTPSQQQRIEQAFGPAPV 144


>L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembly
           abnormal protein 4 protein.
          Length = 808

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -3

Query: 436 GVRQAARPRLE--HGTPRFKLPRSNFRRAGTRLLPGAEITSPS 314
           G ++ +RP L    GT RF++PR+N   AG    P +E++S S
Sbjct: 11  GEQKPSRPFLRKGQGTARFRMPRNNKTSAGAP--PTSELSSAS 51


>AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein
           protein.
          Length = 808

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -3

Query: 436 GVRQAARPRLE--HGTPRFKLPRSNFRRAGTRLLPGAEITSPS 314
           G ++ +RP L    GT RF++PR+N   AG    P +E++S S
Sbjct: 11  GEQKPSRPFLRKGQGTARFRMPRNNKTSAGAP--PTSELSSAS 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,172,526
Number of Sequences: 27780
Number of extensions: 373832
Number of successful extensions: 1280
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)