Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_F23
         (917 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF408761-1|AAO27840.1|  741|Caenorhabditis elegans Rap1GAP protein.    30   2.7  
AF016660-3|AAN84803.1|  376|Caenorhabditis elegans Hypothetical ...    30   2.7  
AF016660-2|AAB66048.2|  811|Caenorhabditis elegans Hypothetical ...    30   2.7  
AF016660-1|AAK71368.1|  742|Caenorhabditis elegans Hypothetical ...    30   2.7  
Z93377-5|CAB07579.1|  195|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AF408761-1|AAO27840.1|  741|Caenorhabditis elegans Rap1GAP protein.
          Length = 741

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 384 GFSATIAQRSPTYATPLMSPYNARLESSSTGSS 286
           G  AT+ +R+  YATPL+   ++  ES++T SS
Sbjct: 497 GLHATLRERAEFYATPLLESTSSGGESAATTSS 529


>AF016660-3|AAN84803.1|  376|Caenorhabditis elegans Hypothetical
           protein F53A10.2b protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 384 GFSATIAQRSPTYATPLMSPYNARLESSSTGSS 286
           G  AT+ +R+  YATPL+   ++  ES++T SS
Sbjct: 132 GLHATLRERAEFYATPLLESTSSGGESAATTSS 164


>AF016660-2|AAB66048.2|  811|Caenorhabditis elegans Hypothetical
           protein F53A10.2c protein.
          Length = 811

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 384 GFSATIAQRSPTYATPLMSPYNARLESSSTGSS 286
           G  AT+ +R+  YATPL+   ++  ES++T SS
Sbjct: 567 GLHATLRERAEFYATPLLESTSSGGESAATTSS 599


>AF016660-1|AAK71368.1|  742|Caenorhabditis elegans Hypothetical
           protein F53A10.2a protein.
          Length = 742

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 384 GFSATIAQRSPTYATPLMSPYNARLESSSTGSS 286
           G  AT+ +R+  YATPL+   ++  ES++T SS
Sbjct: 498 GLHATLRERAEFYATPLLESTSSGGESAATTSS 530


>Z93377-5|CAB07579.1|  195|Caenorhabditis elegans Hypothetical
           protein F13A7.9 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -1

Query: 458 RAPADIIDRAPLPPNRVSNETMKVVV--FQRRSRNDLPL 348
           RAP D    AP+P  +V+ + + +V+   ++R  ++LP+
Sbjct: 53  RAPEDSAPMAPIPVEKVTGDILNMVIKWCEQRKEDELPV 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,180,064
Number of Sequences: 27780
Number of extensions: 378454
Number of successful extensions: 1059
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)