Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_F21
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.37 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   6.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   7.0  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 207 VRVHRANTGRSSNELDRQTTELERR 281
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = -2

Query: 797 GETXGRGWXXGXRXXXRGGXXQXXPRXXXGXGXQRXXRGG 678
           G   GRG   G R   RGG          G G  R  RGG
Sbjct: 20  GFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 19/60 (31%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
 Frame = +3

Query: 684 PXXPLAARXXXPPGXXLXXPXAXXXPP-APXPPPXXGFPPXXFIYGXXXXPAAXAXPVXP 860
           P  P +     PP   +  P A   PP AP  PP     P          PAA A P  P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPA----APPLPPAAPAPPPAP 480


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +3

Query: 678 PXPXXPLAARXXXPPGXXLXXPXAXXXPPAPXPPP 782
           P P  P A     PP        A   PP P PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.4 bits (48), Expect(2) = 7.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 762 PAPXPPPXXGFPP 800
           PAP PPP    PP
Sbjct: 236 PAPPPPPPPTLPP 248



 Score = 20.6 bits (41), Expect(2) = 7.0
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +3

Query: 741 PXAXXXPPAPXPPP 782
           P     PP P PPP
Sbjct: 184 PSDYNPPPPPPPPP 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,461
Number of Sequences: 5004
Number of extensions: 55176
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)