Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_F18
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb...    30   0.51 
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    29   1.2  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    28   1.6  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    27   4.7  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    26   6.3  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    26   8.3  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   8.3  

>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +3

Query: 384 SGITILTDSPPGKKAPLKNFEEIQPLIQQGRKRELKLIIRENSWPINSPV 533
           S + +LT   PG  +  ++ +++  LI  G  REL++I R  S  +N P+
Sbjct: 3   SSVLVLTS--PGFASKEESLKKVFDLIDNGASRELQMIDRVQSQLVNLPI 50


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 273 E*ICVCEDRVGMPSVMLSAVLEEEPDLYEAFPPHVDPSGITILTDSP 413
           E +C CE  + + ++ +  ++ EEP +YE  PP     GI+ + + P
Sbjct: 208 ENLCPCESCISLRNLEMPMLVAEEP-IYE--PPEDSEDGISEMNEDP 251


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1325

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +3

Query: 336  EEEPDLY---EAFPPHVDPSGITILTDSPPGKKAPLKNFEEIQPLIQQGRKRELK 491
            EE  DL     + PP +   G+  + D  P +K  L +F   QPL+ Q   +  K
Sbjct: 934  EESSDLNGKRRSTPPKIHEVGVNKMLDVVPKEKRDLNSFFPKQPLVVQSTDKNKK 988


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -1

Query: 611 HVPVEAVEHRLPMLMLPAESGPKRCSDRAVDRPGIFSDDQLELALATLLNQRLDLFEVF 435
           H+P  A  H  P   LP  +  K+ S  A+D    ++ + +ELA  T++ +   + +VF
Sbjct: 358 HLPYLASVH--PFSYLPDSTNSKQLSHCALDCELCYTTNGMELARLTVVAKESIIMDVF 414


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 321 LSAVLEEEPDLYEAFPPHVDPSGITILTDSPPGKKAPLKNFEEIQP 458
           L  + EE+ DLY  FP  +  +    L  +P   K P +  + + P
Sbjct: 69  LGELQEEKTDLYPNFPAQLKENKKPKLPTTPQTPKTPKRTIQIVTP 114


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 451 ISSKFLRGAFLPGGLSVSIVIPLGSTCG 368
           +S K L+  F P G  ++I IP G  CG
Sbjct: 308 LSEKDLQVCFQPFGRILNIKIPFGKGCG 335


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 509 IFSDDQLELALATLLNQRLDLFEVFKGCFLA-WWTVSEYCNS 387
           + SDD +  AL T+ +  L+ ++     F A WW      NS
Sbjct: 89  VTSDDSINSALTTVTDGMLNYYQSTSHTFTAYWWMTGAGLNS 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,753,899
Number of Sequences: 5004
Number of extensions: 78698
Number of successful extensions: 206
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)