Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_F18
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817           31   0.93 
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152...    31   1.6  
04_04_0908 + 29309978-29310144,29310294-29310621,29310944-29311189     31   1.6  
02_02_0455 + 10445417-10446931,10447370-10447903,10448198-104482...    29   5.0  
03_06_0473 - 34181212-34181430,34181512-34181735,34181812-341819...    29   6.6  
03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917     29   6.6  
04_04_1633 + 34928139-34928511,34928700-34928774,34929385-349294...    28   8.7  
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510...    28   8.7  

>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
          Length = 883

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 729 SVRPYPCGLDGTRGSGSPPRKAAT*SACPAAPLCRIPV*PCP 604
           ++  Y  G DG   S + PR   T + C  AP  R+P  P P
Sbjct: 325 TITRYSFGYDGASSSSAMPRMRTTLALCVPAPHPRVPRAPAP 366


>11_06_0645 -
           25814302-25814759,25814853-25815005,25815032-25815214,
           25815342-25815531,25815624-25815784,25816136-25816623,
           25817035-25817075
          Length = 557

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +1

Query: 511 PGRSTARSEHRFGPLS---AGNINMGSLCSTASTGTWSHR 621
           PG S + +E   G LS   AG+I+   + +    G+WSHR
Sbjct: 456 PGGSYSAAEQNLGHLSVSEAGSISYNEISAVNEAGSWSHR 495


>04_04_0908 + 29309978-29310144,29310294-29310621,29310944-29311189
          Length = 246

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 342 EPDLYEAFPPHVDPSGITILTDSP 413
           EPDL    P H DP+ +TIL   P
Sbjct: 109 EPDLTYGLPKHTDPNALTILLPDP 132


>02_02_0455 +
           10445417-10446931,10447370-10447903,10448198-10448278,
           10448699-10448770,10449643-10449669
          Length = 742

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
 Frame = +3

Query: 405 DSPPGKKAPLKNFEEIQPLIQQGRKRELKLIIRENSWPINSPVRASLWPALCRQHQH--- 575
           +S  GK+A   + + IQ ++++  K +  LII ++ W          W   C    +   
Sbjct: 276 ESASGKEAKTDHLDSIQHVLRENVKNKRILIILDDVWDDALKENGQCWKKFCSPLANVCQ 335

Query: 576 GKSMLDGFYWDMVTQVFGTVE 638
           G  ML       V+   GT+E
Sbjct: 336 GSMMLITTRSSKVSNALGTLE 356


>03_06_0473 -
           34181212-34181430,34181512-34181735,34181812-34181973,
           34182071-34182167
          Length = 233

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 357 EAFPPHVDPSGITIL-TDSPPG 419
           EAF PH  P G +IL T SPPG
Sbjct: 137 EAFKPHSFPPGASILFTHSPPG 158


>03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917
          Length = 447

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = -3

Query: 708 GLDGTRGSGSP---PRKAAT*SACPAAPLCRIP 619
           G  G  GSG     PR ++  S+C A PLCR P
Sbjct: 224 GFGGGGGSGEAHCTPRTSSRRSSCYATPLCRTP 256


>04_04_1633 +
           34928139-34928511,34928700-34928774,34929385-34929483,
           34929736-34929908,34929990-34930066,34930182-34930301,
           34930385-34930472,34930610-34930716,34930814-34930871
          Length = 389

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = +2

Query: 578 EVYARRLLLGHGHTGIRHSGAAGQADYVAAFRGGXPLPRVPS 703
           EV ARR LL   +T I  SGA   +D++ A  G  P+P  PS
Sbjct: 97  EVVARRALLRLIYTEIGRSGA---SDWLVASGGVMPVPPSPS 135


>03_02_0027 +
           5100865-5100878,5102241-5102708,5102795-5103021,
           5103670-5104577
          Length = 538

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/52 (36%), Positives = 21/52 (40%)
 Frame = -1

Query: 176 CAALVTVSKSNLAAPFLNRNPDDK*CEAGSAPPYLPLWSPRDD*AEWPVPDP 21
           C AL   S    AAP    + D     AG+ PP  PL  P    A  P P P
Sbjct: 172 CDALAEESAKARAAPPPPADEDGTSASAGAPPPQAPLPPPAPVPAPAPPPPP 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,746,503
Number of Sequences: 37544
Number of extensions: 625754
Number of successful extensions: 1860
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1860
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)