Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_F18
(890 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41748-2|AAM51524.1| 639|Caenorhabditis elegans Hypothetical pr... 36 0.039
U41748-1|AAA83335.3| 696|Caenorhabditis elegans Hypothetical pr... 36 0.039
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 30 2.6
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 30 2.6
U80024-10|AAK18891.1| 297|Caenorhabditis elegans Serpentine rec... 29 5.9
Z81123-4|CAB03367.2| 986|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z54281-8|CAA91051.2| 986|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z37139-2|CAA85486.1| 384|Caenorhabditis elegans Hypothetical pr... 28 7.8
U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protei... 28 7.8
AF040643-12|AAB94964.2| 658|Caenorhabditis elegans Hypothetical... 28 7.8
>U41748-2|AAM51524.1| 639|Caenorhabditis elegans Hypothetical
protein C31H2.1b protein.
Length = 639
Score = 35.9 bits (79), Expect = 0.039
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 405 DSPPGKKAPLKNFEEIQPLIQQGRKRELKLIIRENSWPINSPVRASLWPALC 560
D+ G+ + +EI + R ++K IIR WP+ +RA+LW LC
Sbjct: 122 DTRIGESSVPNLLQEIVDNKRLNRYEKVKKIIRRTDWPVCHEIRANLWKELC 173
>U41748-1|AAA83335.3| 696|Caenorhabditis elegans Hypothetical
protein C31H2.1a protein.
Length = 696
Score = 35.9 bits (79), Expect = 0.039
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 405 DSPPGKKAPLKNFEEIQPLIQQGRKRELKLIIRENSWPINSPVRASLWPALC 560
D+ G+ + +EI + R ++K IIR WP+ +RA+LW LC
Sbjct: 179 DTRIGESSVPNLLQEIVDNKRLNRYEKVKKIIRRTDWPVCHEIRANLWKELC 230
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 29.9 bits (64), Expect = 2.6
Identities = 23/99 (23%), Positives = 38/99 (38%)
Frame = +3
Query: 300 VGMPSVMLSAVLEEEPDLYEAFPPHVDPSGITILTDSPPGKKAPLKNFEEIQPLIQQGRK 479
VG S+ +S + P + E PP P + +++ P L + IQP
Sbjct: 287 VGPSSMKMSPI--PPPPIKEESPPPPPPPPVASVSNLAPVPSVQLPYYNNIQPSSSTMHM 344
Query: 480 RELKLIIRENSWPINSPVRASLWPALCRQHQHGKSMLDG 596
E + S+ P R++ +L R +S DG
Sbjct: 345 PEFRPTEPPPSYSREDPYRSTSRSSLSRHRNRSRSPSDG 383
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 29.9 bits (64), Expect = 2.6
Identities = 23/99 (23%), Positives = 38/99 (38%)
Frame = +3
Query: 300 VGMPSVMLSAVLEEEPDLYEAFPPHVDPSGITILTDSPPGKKAPLKNFEEIQPLIQQGRK 479
VG S+ +S + P + E PP P + +++ P L + IQP
Sbjct: 287 VGPSSMKMSPI--PPPPIKEESPPPPPPPPVASVSNLAPVPSVQLPYYNNIQPSSSTMHM 344
Query: 480 RELKLIIRENSWPINSPVRASLWPALCRQHQHGKSMLDG 596
E + S+ P R++ +L R +S DG
Sbjct: 345 PEFRPTEPPPSYSREDPYRSTSRSSLSRHRNRSRSPSDG 383
>U80024-10|AAK18891.1| 297|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 11 protein.
Length = 297
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 428 CFLAWWTVSEYCNSAWVNMWWERLIEIRLLFKHCRQHHGGHSD 300
CF ++W A +N + L+ I+L+F + QH GH +
Sbjct: 178 CFFSYWASDRSAMFA-LNFIFSGLLSIKLIFFNKPQHGNGHKE 219
>Z81123-4|CAB03367.2| 986|Caenorhabditis elegans Hypothetical
protein F46C5.6 protein.
Length = 986
Score = 28.3 bits (60), Expect = 7.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 642 PDKPIMLPPFVEAXH 686
PDKP ++PPF+E H
Sbjct: 486 PDKPDLIPPFIELLH 500
>Z54281-8|CAA91051.2| 986|Caenorhabditis elegans Hypothetical
protein F46C5.6 protein.
Length = 986
Score = 28.3 bits (60), Expect = 7.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 642 PDKPIMLPPFVEAXH 686
PDKP ++PPF+E H
Sbjct: 486 PDKPDLIPPFIELLH 500
>Z37139-2|CAA85486.1| 384|Caenorhabditis elegans Hypothetical
protein C14B1.3 protein.
Length = 384
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 594 GFYWDMVTQVFGTVELPDKPIMLPPFVEAXHC 689
GFY V + V LPD+PI+ P V++ C
Sbjct: 300 GFYGPKVANIQVEVILPDEPIVKPLAVDSEKC 331
>U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protein
145 protein.
Length = 294
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 708 GLDGTRGSGSPPRKAAT*SACPAAP 634
G DG RGSG+P A +A PA P
Sbjct: 207 GADGQRGSGAPGAPGAPGNAGPAGP 231
>AF040643-12|AAB94964.2| 658|Caenorhabditis elegans Hypothetical
protein F14D2.9 protein.
Length = 658
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 639 LPDKPIMLPPFVEAXHCLGYHLTRKGXAVPTEL 737
LPD +++PPF+ A + G H + PT++
Sbjct: 529 LPDPNVLMPPFILADNGFGLHKSMMQPYRPTQI 561
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,566,102
Number of Sequences: 27780
Number of extensions: 484711
Number of successful extensions: 1383
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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